Sinorhizobium medicae: Smed_2070
Help
Entry
Smed_2070 CDS
T00555
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03030
DNA replication
smd03410
Base excision repair
smd03420
Nucleotide excision repair
smd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Smed_2070
03410 Base excision repair
Smed_2070
03420 Nucleotide excision repair
Smed_2070
03430 Mismatch repair
Smed_2070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smd03032
]
Smed_2070
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_2070
Enzymes [BR:
smd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Smed_2070
DNA replication proteins [BR:
smd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Smed_2070
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Smed_2070
NER (nucleotide excision repair)
GGR (global genome repair) factors
Smed_2070
MMR (mismatch excision repair)
DNA ligase
Smed_2070
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Smed_2070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABR60903
UniProt:
A6UB73
LinkDB
All DBs
Position
complement(2122076..2124229)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNQRKPVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEER
FPALIREDSPSQKVGAAPSLTFAPVVHARPMLSLDNSFSDEDARAFVAGIYRFLGRLPDG
SIAFTVEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQRLPAEAPDV
VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRRLRFFAYAW
GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVV
YKVDQLDLQARLGFRSRSPRWATAHKFPAERAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGIGNTGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERPE
GTEPYRFPTSCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI
EGLGSKQIEFFFESEDETLRIRTAPDIFTLERRQESSLTKLENIDGFGKVSVRKLYEAIN
ARRSIGLHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMTEAGGFSGDAWNELNSIDG
IGEVVARAIVEFYKEPRNLKVLSDLLEEVTPERAEMPVATDSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGLQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatcaaagaaaaccggtcgagcaaatgaccgaagccgaagccgccgaggaactc
gccttcctggcggcggaactttcgcgccacgacatgctctatcacgggaaggatgatccg
gagatttcggacgcggactacgacgcgctgaagcggcgcaacgatttgatcgaggagcga
tttccggcgctcatccgcgaggacagcccctcgcaaaaggtcggtgccgcaccttcgctg
accttcgcgcccgtagttcatgcgcggccgatgctttcgctcgacaacagtttctcggac
gaggacgcccgcgcattcgtcgccggcatctaccgctttctcgggcggctcccggatgga
tcgatcgcctttacggtggaaccgaagatcgacggtctctccatgtcgctgcgttacgag
aaccgtcggctggtcacggccgcgacccgcggcgacggcacgaccggggaaaatgtcacc
gccaatgtccgcaccatcggcatgataccgcagaggcttcctgctgaagcgcccgacgtg
gtcgagatccgcggcgaaatctatatggcgaaatccgacttcgccgcgctcaatgccgaa
atggcggcgcagggcaggccactctacgtcaacccccgcaataccgcatccggatcgctc
cgccagctcgatgccaaggtgaccgcgagccgcaggctgcgcttcttcgcctatgcctgg
ggcgagatgtcggcgatgccggcggatacgcagctcggaatggtggagaccttcaaggcc
tggggattcccggtcaatccgctgatgcagcgcttcttctccgccgacgagctcctggag
cactatcaccatatcgagcgggagcgtccggagctggactacgacatcgacggggtcgtc
tacaaggtcgaccagctcgatctgcaggctaggctcggcttccgttcgcgcagcccgcgc
tgggcgacggcgcacaagttcccggcagagcgggcattcacgcggctgaagggcatcgac
atccaggtcgggcgcaccggcgcgctgacgcctgtcgcgcggctggagccaatcacggtc
gggggcgtggtcgtgaccaatgcaacgctgcacaacgaggattacatccgcggcatcggc
aatacgggcgaaccgatccgcgaagggcgcgacatccgcatcggcgacatggtcatcgtt
cagagggcaggggacgtgattccccagatcgtcgacgtggtgatggacgagcgccctgaa
gggaccgagccttaccggtttccgacgagctgccctatctgcggcagtcacgcggttcgc
gacatcaacgagaagaccggcaaggtagatgccgtgcgccgttgcacgggcggtttcgtc
tgccgcgcgcaggcggtcgagcacctgaagcatttcgtctcgcgtaatgccttcgacatc
gaggggctcggctccaagcagatcgagtttttcttcgaaagcgaggacgagaccctcagg
atccgcaccgcaccagatatcttcacgctcgaacgcaggcaggagtcctcgcttacgaag
ctcgaaaacatcgatggcttcggcaaggtcagcgtccgtaaactctacgaggcgatcaat
gcccgccgctcgattgggctgcatcgctttatctatgcgctcggaatccgccacgtcggg
gagacgacggccaagcttctggcgcgctcctacggcacctacgagcacttcggcgcggcc
atgaccgaggcgggcggcttttcgggagacgcctggaacgaactgaacagcatcgacggc
ataggcgaggtggtcgcccgcgccatcgtcgaattctacaaggagccgcgcaacctgaag
gtcctctccgaccttctggaggaggttacgcctgagcgtgcggagatgcccgttgcgacc
gacagccccgtggccggcaagacggtcgtcttcaccggttcactcgaaaagatgacccgc
gacgaggccaaggcgaaagcggagagtctcggcgccaaggtcgcaggctccgtctccaag
aagaccgacatcgtcgtcgcaggccctggcgccggctcgaagctcgacaaggcacgcgaa
ctcggcctccagacgatggacgaggacgagtggttggcgctgatcggcgggtag
DBGET
integrated database retrieval system
