Sinorhizobium medicae: Smed_4937
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Entry
Smed_4937 CDS
T00555
Name
(GenBank) Radical SAM domain protein
KO
K10026
7-carboxy-7-deazaguanine synthase [EC:
4.3.99.3
]
Organism
smd
Sinorhizobium medicae
Pathway
smd00790
Folate biosynthesis
smd01100
Metabolic pathways
Module
smd_M00988
PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00790 Folate biosynthesis
Smed_4937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smd03016
]
Smed_4937
Enzymes [BR:
smd01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.99 Other carbon-nitrogen lyases
4.3.99.3 7-carboxy-7-deazaguanine synthase
Smed_4937
Transfer RNA biogenesis [BR:
smd03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Smed_4937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
ABR63719
UniProt:
A6UJ89
LinkDB
All DBs
Position
pSMED01:complement(1448254..1448991)
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AA seq
245 aa
AA seq
DB search
MTNVRSDEIRVSEIFGPTIQGEGVLIGLPTVFVRSGGCDYRCSWCDSLHAVESSYRHEWH
AMSTEAVWQEIVRLSRGEAVMVSLSGGNPAIQPFGDLIGRGHRNGYRFALETQGSIAREW
FAELDVLVLSPKPPSSGMETDWQAFDVCLRMAAGKPQTVLKFVVFDEADYAYARAAAARH
PHLPVYLQPGNHTPPPSDDKDAPIDLEGVMERMRWLVDATIEDGWFEARVLPQLHVLIWG
NKRGV
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgtccgatccgacgagatccgcgtgagcgagatattcggaccgacgatccag
ggcgagggagtgctgataggcctcccgacggtattcgtcaggagcggcggctgcgattac
cgctgttcctggtgcgacagcctgcatgccgtcgagagcagttaccggcatgaatggcac
gcgatgtcgacggaggcggtctggcaggaaatcgttcggctgtcccggggcgaggcggtg
atggtttcgctgtcgggcggaaatccggctatacagccgttcggcgatctgatcggccgc
gggcaccggaacggctaccggttcgcgctggagacgcagggctcgatcgcccgggagtgg
ttcgccgaactcgatgtgctggtactcagtccaaaaccgccctcgagcgggatggagacg
gattggcaggccttcgacgtctgcctgcgaatggctgcaggcaagccgcagaccgtgttg
aagttcgtggttttcgacgaggcggattatgcctatgcaagggctgcagccgcgcgccac
ccgcatctgcccgtctatctgcagcctggcaaccatacgccgccgccctccgacgacaag
gatgcgccgatcgatctcgagggtgtgatggagcggatgcgttggctggtcgacgcgaca
attgaggacggatggttcgaggcgcgggtgctgccgcagttgcatgtcctcatttggggc
aataagcggggcgtttga
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