Sinorhizobium meliloti 1021: SMc01878
Help
Entry
SMc01878 CDS
T00058
Symbol
ligA
Name
(GenBank) Probable DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sme
Sinorhizobium meliloti 1021
Pathway
sme03030
DNA replication
sme03410
Base excision repair
sme03420
Nucleotide excision repair
sme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMc01878 (ligA)
03410 Base excision repair
SMc01878 (ligA)
03420 Nucleotide excision repair
SMc01878 (ligA)
03430 Mismatch repair
SMc01878 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sme03032
]
SMc01878 (ligA)
03400 DNA repair and recombination proteins [BR:
sme03400
]
SMc01878 (ligA)
Enzymes [BR:
sme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SMc01878 (ligA)
DNA replication proteins [BR:
sme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SMc01878 (ligA)
DNA repair and recombination proteins [BR:
sme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SMc01878 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMc01878 (ligA)
MMR (mismatch excision repair)
DNA ligase
SMc01878 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMc01878 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
HHH_3
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
CAC46743
UniProt:
Q92NM8
LinkDB
All DBs
Position
complement(2327922..2330075)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNQRKSVEQLNEAEAAEELAFLAAELARHDMLYHGKDAPEISDADYDALKRRNDLIEER
FPVLVREDSPSRKVGAAPSLTFAPVVHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDG
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQTLPADAPDV
VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAW
GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGVGNTGEPIRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPE
GAEPYRFPTTCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI
EGLGSKQIEFFFESEDENLRIRTAPEIFTLERRQEASLNKLENTDGFGKVSVRKLYEAIN
ARRSIALHRLIYALGIRHVGETTAKLLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDG
IGEVVARAIVEFYKEPRNLKVVSELLQEVTPESAELPVATDSPVAGKTVVFTGSLEKMTR
EEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatcaaagaaaatccgtcgaacaattgaacgaagcggaagctgccgaggaactc
gccttcctggcggcggagcttgcccgccacgacatgctttatcacggcaaggatgctccg
gagatttcggatgcggactacgatgcgctgaagcggcggaacgatctgatcgaagagcgc
ttcccggtacttgtccgcgaggacagtccctcgcggaaggtcggtgccgcaccctcgctg
accttcgcgccggtcgttcatgcgcggccgatgctgtcgctcgacaataccttctcggac
gaggatgcccgcgcattcgtcgccggtgtctaccgcttcctcggcaagctcccggacggc
tcgatcgccttcacggccgagccgaagatcgacgggctgtccatgtcgctgcgctacgaa
aaccggcggctcgtcacggcagctacccgcggcgacggcacgaccggggaaaacgtcacc
gccaatgtccgcaccatcggcatgatcccgcagacgcttcccgcggacgcgcctgatgtc
gtcgagatccgcggcgagatctatatggcgaaatcggacttcgccgcgctcaatgccgaa
atggcggcgcagggcaggccgctctatgtcaacccgcgcaatacggcgtcgggttcgctc
cgtcagctggacgcgaaggtgacggcgaaccgcaagctgcgcttcttcgcctatgcctgg
ggcgagatgtcggcgatgccggcggatacgcagctcggcatggtggagaccttcaaggcc
tggggattcccggtcaatccgctgatgcagcgcttcttctccgccgacgagctcctggag
cactatcaccatatcgagcgggagcgtccggacctcgactacgacatcgacggcgtcgtc
tacaaggtcgaccggctcgatctgcaggccaggctcggcttccgctcgcgcagtccgcgc
tgggcaacggcgcacaagtttccggccgaacaggctttcacgcgtctgaagggcatcgac
attcaggtcggccgtaccggcgccctgacgcccgtcgcgcggctggagccgatcaccgtc
gggggcgtcgtcgtcaccaacgccacgctgcacaacgaggactatatccgcggcgtcggc
aacaccggtgagccgatccgcgatgggcgcgacgtccgtatcggcgacatggttatcgtc
cagcgggcaggggacgtgatcccccagatcgtcgacgtggtgatggacgagcggccggaa
ggcgccgagccctacaggtttccgacgacgtgccccatctgcggcagccatgcggtgcgt
gacatcaacgaaaagacgggcaaggtggatgccgtgcgccgctgcacgggcggcttcgtc
tgccgtgcgcaggcggtcgagcatctgaagcatttcgtctcgcgcaatgccttcgacatc
gaaggcctcggctccaagcagatcgagttcttcttcgaaagcgaagacgagaatctgagg
atccgcaccgcccctgagatcttcacgctcgaacgccgccaggaggcatcgctcaacaag
ctcgagaacaccgacggattcggcaaggtaagcgtccgcaagctgtacgaggcgatcaat
gcccgccgctcgatagcgcttcatcgcctgatctatgcgctaggcatccgccatgtgggc
gagacgacggccaagctgcttgcgcgctcctatggcagctacgagcatttcggggccgcc
atgaccgaggcggcgggcttttcgggagatgcctggaacgagctgaacagcatcgacggc
attggcgaggtggtcgcgcgcgccattgtcgagttctataaggagccgcgcaacctgaag
gtcgtttccgagctgctgcaagaggttacgccggaaagcgcggagttgcccgtcgcgacc
gacagccccgtcgcggggaagacggtggtcttcaccggatctctcgagaagatgacgcgc
gaggaggcgaaggcgaaggcggagagtctcggcgccaaggtggcgggatcggtgtcgaag
aagaccgacatcgtcgtcgccggccccggcgccggctcgaagctcgacaaggcccgcgaa
ctcggcgtccagacgatggacgaggacgagtggctggcgctgattggcgggtag
DBGET
integrated database retrieval system
