Sulfitobacter mediterraneus: JNX03_03865
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Entry
JNX03_03865 CDS
T07747
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03030
DNA replication
smed03410
Base excision repair
smed03420
Nucleotide excision repair
smed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNX03_03865 (ligA)
03410 Base excision repair
JNX03_03865 (ligA)
03420 Nucleotide excision repair
JNX03_03865 (ligA)
03430 Mismatch repair
JNX03_03865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smed03032
]
JNX03_03865 (ligA)
03400 DNA repair and recombination proteins [BR:
smed03400
]
JNX03_03865 (ligA)
Enzymes [BR:
smed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JNX03_03865 (ligA)
DNA replication proteins [BR:
smed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JNX03_03865 (ligA)
DNA repair and recombination proteins [BR:
smed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JNX03_03865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNX03_03865 (ligA)
MMR (mismatch excision repair)
DNA ligase
JNX03_03865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JNX03_03865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QRD43243
LinkDB
All DBs
Position
802364..804484
Genome browser
AA seq
706 aa
AA seq
DB search
MTSEIAVDALSKTQAEAELARLAQILLAANNAYHGADDPDISDAEYDRLKRRNSAIELRF
PELKRDDSPTEQVGAAPAAGFSKVAHEVAMLSLSNAFDAEDVREFDGRIRKYLGLAADAP
LRYTAEPKIDGLSLSLRYENGVLVQAATRGDGETGENVTANAKTIADVPHQIETDLSVLE
VRGEVYMSHADFDALNHRQQDKGDKTFANPRNAAAGSLRQLDTEITRSRPLRFFAYAWGA
LSHPLADTQMGAIERLSEFGFSTNPLTTLCDGPQQMLDHYAKIETQRATLGYDIDGVVYK
VNDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLDGIDIQVGRTGALSPVARLHPVTVGG
AVVSNATLHNEDYIKGFDSKGAEIRQGKDIRVGDWVQVYRAGDVIPKVADVDLSKREADA
APYAFPHICPECGSEAVREPGDAVRRCTGGLICPAQAVEKLKHFVSRGAFDIDGLGAKQI
EQFYADGWIAEPADIFTLRKRFGEGLQQLKNREGWGEKSAANLFDAIDDKRNIPLGRLIF
ALGIRHVGEAASNLFALHYGTWEAFESAVVAAADPDSNAWADLIGVDGVGTVMAGSLVSA
FAQEAERASIDRLVAHLSVKPAQRADTSGSPVAGKTVVFTGTLEKMTRAEAKARAERLGA
KVSGSVSAKTDILVAGPGAGSKAKKAAELGIETLDEDGWLSLIEGA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgacatccgaaatagcggttgatgcgctaagcaaaacccaggctgaggcggagctggcc
cgtctggcgcagatcctgttggctgcgaataatgcctaccatggcgcagatgaccctgac
atttcggatgcagaatatgacaggctcaagcgccgcaactctgcaattgagcttcgtttc
cccgagttgaaacgggatgacagcccaaccgaacaagtgggggccgcgcccgccgcaggg
ttttccaaagttgcccatgaagtggcgatgctgtccttgtccaacgcttttgatgcggaa
gacgtgcgcgaatttgatggacgtattcgcaagtacctcggcctggcggcggatgcgcct
ttgcgttacacggcagagcccaaaattgatggtctgtccctttccttgcgctatgagaac
ggcgttttggtgcaggcggccacccgcggtgatggcgaaacgggtgaaaacgtcactgca
aacgcaaaaaccattgccgatgtgccacaccagatcgagaccgatctgtcggttcttgag
gtgcgcggcgaggtttatatgagccatgccgattttgatgccctcaaccacagacaacaa
gacaaaggcgacaagacctttgccaacccccgaaacgccgcggccggatcgctgcggcaa
ttggacaccgaaatcaccagatcgcgcccattgaggttttttgcctatgcttggggcgct
ttgtctcatcctctggccgatacgcaaatgggggcgattgaacggttgagtgaatttggg
ttttcgacaaacccgctcaccactttgtgcgatgggccgcaacagatgctggaccactat
gccaagatcgagacccagcgcgcaacgcttggctatgacattgatggtgtcgtttataaa
gtgaacgatctggcgcttcagggcaggcttggatttcgctcaaccacgccgcgttgggcc
attgcgcataaattcccggcagagctggcctggacccgcctggacggtatcgatattcaa
gttggccgcacaggtgcattgtcgcccgtcgcgcgcttgcatccggtgacagtgggcggc
gctgttgtgtcaaacgcgaccctgcacaacgaggactacatcaaagggtttgacagcaag
ggcgcagaaattcgccagggcaaggacatccgggtaggcgattgggtacaggtttaccgt
gcgggcgatgtgatcccgaaagttgccgatgtagatctgagcaaacgggaggcggacgcc
gcaccctatgcgttcccgcacatctgccccgaatgtggatcagaagccgtcagggagccg
ggagatgctgtgcgccgctgtacaggtggattgatttgcccggcgcaagctgttgaaaaa
ttgaaacattttgtatcacgcggtgccttcgacatcgacggtcttggtgcaaaacagatc
gaacaattctacgccgatggctggatcgcggaacctgcggatatattcacactgagaaag
cgcttcggcgaggggctgcaacagctcaaaaaccgtgaaggttggggagaaaaatccgct
gccaatctctttgacgcgattgacgacaaacgaaatatcccgctgggacggttaatcttt
gcccttggcattcgccatgtcggagaggcagcctcgaacctcttcgcgctgcattacggc
acctgggaggccttcgaaagcgctgtggtggctgcggcggatccggacagcaatgcctgg
gccgacctcatcggcgtggatggcgtgggcaccgtcatggccggatcgttggtcagcgcc
tttgcccaagaggccgaacgcgcgtccattgatcggcttgtggcgcatctttcggtcaaa
ccggcgcagcgggccgacaccagcggcagcccggttgccggaaaaactgtggttttcacc
ggaacactggaaaaaatgacccgcgctgaggccaaagcccgtgccgaacggcttggtgct
aaggtgtccggatccgtcagtgccaagacagatatccttgtcgcgggcccgggcgcagga
tccaaagccaaaaaggcggcggaacttgggatagaaaccttggacgaggacggctggctg
tccctgatcgagggcgcatga
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