Sinorhizobium meliloti GR4: C770_GR4Chr2220
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Entry
C770_GR4Chr2220 CDS
T02405
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03030
DNA replication
smeg03410
Base excision repair
smeg03420
Nucleotide excision repair
smeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C770_GR4Chr2220
03410 Base excision repair
C770_GR4Chr2220
03420 Nucleotide excision repair
C770_GR4Chr2220
03430 Mismatch repair
C770_GR4Chr2220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeg03032
]
C770_GR4Chr2220
03400 DNA repair and recombination proteins [BR:
smeg03400
]
C770_GR4Chr2220
Enzymes [BR:
smeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C770_GR4Chr2220
DNA replication proteins [BR:
smeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C770_GR4Chr2220
DNA repair and recombination proteins [BR:
smeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C770_GR4Chr2220
NER (nucleotide excision repair)
GGR (global genome repair) factors
C770_GR4Chr2220
MMR (mismatch excision repair)
DNA ligase
C770_GR4Chr2220
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C770_GR4Chr2220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
HHH_3
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
AGA07146
LinkDB
All DBs
Position
complement(2303231..2305384)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNQRKSVEQLNEAEAAEELAFLAAELARHDMLYHGKDAPEISDADYDALKRRNDLIEER
FPVLVREDSPSRKVGAAPSLTFAPVVHARPMLSLDNTFSDEDARAFVAGVYRFLGKLPDG
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPQTLPADAPDV
VEIRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTANRKLRFFAYAW
GEMSAMPADTQLGMVETFKAWGFPVNPLMQRFFSADELLEHYHHIERERPELDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDHIRGVGNTGEPIRDGRDVRIGDMVIVQRAGDVIPQIVDVVMDERPE
GAEPYRFPTTCPICGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI
EGLGSKQIEFFFESEDENLRIRTAPEIFTLERRQEASLNKLENTDGFGKVSVRKLYEAIN
ARRSIALHRLIYALGIRHVGETTAKLLARSYGSYEHFGAAMTEAAGFSGDAWNELNSIDG
IGEVVARAIVEFYKEPRNLKVVSELLQEVTPESAELPVATDSPVAGKTVVFTGSLEKMTR
EEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatcaaagaaaatccgtcgaacaattgaacgaagcggaagctgccgaggaactc
gccttcctggcggcggagcttgcccgccacgacatgctttatcacggcaaggatgctccg
gagatttcggatgcggactacgatgcgctgaagcggcggaacgatctgatcgaagagcgc
ttcccggtacttgtccgcgaggacagtccctcgcggaaggtcggtgccgcaccctcgctg
accttcgcgccggtcgttcatgcgcggccgatgctgtcgctcgacaataccttctcggac
gaggatgcccgcgcattcgtcgccggtgtctaccgcttcctcggcaagctcccggacggc
tcgatcgccttcacggccgagccgaagatcgacgggctgtccatgtcgctgcgctacgaa
aaccggcggctcgtcacggcagctacccgcggcgacggcacgaccggggaaaacgtcacc
gccaatgtccgcaccatcggcatgatcccgcagacgcttcccgcggacgcgcctgatgtc
gtcgagatccgcggcgagatctatatggcgaaatcggacttcgccgcgctcaatgccgaa
atggcggcgcagggcaggccgctctatgtcaacccgcgcaatacggcgtcgggttcgctc
cgtcagctggacgcgaaggtgacggcgaaccgcaagctgcgcttcttcgcctatgcctgg
ggcgagatgtcggcgatgccggcggatacgcagctcggcatggtggagaccttcaaggcc
tggggattcccggtcaatccgctgatgcagcgcttcttctccgccgacgagctcctggag
cactatcaccatatcgagcgggagcgtccggagctcgactacgacatcgacggcgtcgtc
tacaaggtcgaccggctcgatctgcaggccaggctcggcttccgctcgcgcagtccgcgc
tgggcaacggcgcacaagtttccggccgaacaggctttcacgcgtctgaagggcatcgac
attcaggtcggccgtaccggcgccctgacgcccgtcgcgcggctggagccgatcaccgtc
gggggcgtcgtcgtcaccaacgccacgctgcacaacgaggaccatatccgcggcgtcggc
aacaccggtgagccgatccgcgatgggcgcgacgtccgtatcggcgacatggttatcgtc
cagcgggcaggggacgtgatcccccagatcgtcgacgtggtgatggacgagcggccggaa
ggcgccgagccctacaggtttccgacgacgtgccccatctgcggcagccatgcggtgcgt
gacatcaacgaaaagacgggcaaggtggatgccgtgcgccgctgcacgggcggcttcgtc
tgccgtgcgcaggcggtcgagcatctgaagcatttcgtctcgcgcaatgccttcgacatc
gaaggcctcggctccaagcagatcgagttcttcttcgaaagcgaagacgagaatctgagg
atccgcaccgcccctgagatcttcacgctcgaacgccgccaggaggcatcgctcaacaag
ctcgagaacaccgacggattcggcaaggtaagcgtccgcaagctgtacgaggcgatcaat
gcccgccgctcgatagcgcttcatcgcctgatctatgcgctaggcatccgccatgtgggc
gagacgacggccaagctgcttgcgcgctcctatggcagctacgagcatttcggggccgcc
atgaccgaggcggcgggcttttcgggagatgcctggaacgagctgaacagcatcgacggc
attggcgaggtggtcgcgcgcgccattgtcgagttctataaggagccgcgcaacctgaag
gtcgtttccgagctgctgcaagaggttacgccggaaagcgcggagttgcccgtcgcgacc
gacagccccgtcgcggggaagacggtggtcttcaccggatctctcgagaagatgacgcgc
gaggaggcgaaggcgaaggcggagagtctcggcgccaaggtggcgggatcggtgtcgaag
aagaccgacatcgtcgtcgccggccccggcgccggctcgaagctcgacaaggcccgcgaa
ctcggcgtccagacgatggacgaggacgagtggctggcgctgattggcgggtag
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