KEGG   Spiroplasma melliferum: SRED_002918
Entry
SRED_002918       CDS       T07411                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
smei  Spiroplasma melliferum
Pathway
smei03030  DNA replication
smei03410  Base excision repair
smei03420  Nucleotide excision repair
smei03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SRED_002918
   03410 Base excision repair
    SRED_002918
   03420 Nucleotide excision repair
    SRED_002918
   03430 Mismatch repair
    SRED_002918
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smei03032]
    SRED_002918
   03400 DNA repair and recombination proteins [BR:smei03400]
    SRED_002918
Enzymes [BR:smei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SRED_002918
DNA replication proteins [BR:smei03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SRED_002918
DNA repair and recombination proteins [BR:smei03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SRED_002918
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SRED_002918
   MMR (mismatch excision repair)
    DNA ligase
     SRED_002918
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SRED_002918
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 BRCT_2 Nlig-Ia 5_3_exonuc
Other DBs
NCBI-ProteinID: QCO24421
UniProt: A0ABX5UAN0
LinkDB
Position
complement(1205080..1207158)
AA seq 692 aa
MAFQKTNNPPTLQQESKNNKIKEDIMTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQ
EYDRAMQELIAIEQQYSELITIDSPTQRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIH
FDEQIKELTGLPEIEYTCELKIDGLSISLVYDNHLLVMGATRGDGLTGEDVTINIKQIKS
IPLRIDQPTLIVRGEVYLSVEEFNKINEERVKNGESEFANPRNAAAGTLRQLDSTIVAKR
KLNAFLYYYVNALQDGIQSQYEALQRLEQLKFKTNPEYRYCSNIAAVWAYIQEYEPKRHQ
LGYEIDGIVIKVNNLNLYNRIGYTAKNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITY
NAVLEPIRIAGTIVRAATLHNADFITERDIRIGDNVQVKKAGDIIPEVINYVAARRQKNA
QKWQEATHCPECNSLLERVEGEVDQYCINSVCPKKITRGLEHYCSRNAMNIEGISEKIIE
RLFKLEYLKSFSDLYQLEQYRAEIIELENFGEKSFENMITSINNSKNNSLERLLFALGIR
HVGQKTAKLLARQFKTIDNLAAMNIEQLSIINDIGPIVAASVVDYFAIPANQQELALLRQ
NGVKMEYFATNQHLAQKFENYRFVITGVLSKSREYFKELIESYGGQVSESVSAKTTYLLA
GTDAGNKLVKAQKLNVKIINEEEFQQLLNKED
NT seq 2079 nt   +upstreamnt  +downstreamnt
atggcatttcaaaaaaccaacaatccccccacattacaacaagaatctaaaaataataaa
ataaaggaggatattatgacttttgagcaagcaaaaaaacgtagtttagtgttaaaagaa
caattagaaaaatgaaattatgaatattatgttaatgataaccctagtgttagtgaccaa
gaatatgatcgagcaatgcaagaattaattgcaattgaacagcaatatagtgaattaatt
acaattgattcaccaacgcaacgtgtttctggccaaattagtgaaaagtttaataaatat
gttcatacaagtccaatgctaagtttaggaaacgcgtttaattatgatgatttaattcat
tttgatgagcaaattaaagaattaactggtttgccagaaattgaatatacttgtgaatta
aaaattgatggattatcaatttcattagtttatgataatcatcttttagtgatgggggca
actcggggcgatggtcttaccggtgaagatgttactattaatattaaacaaattaaatca
attccccttcgaattgaccaaccaactttaattgttcggggagaagtttatttatcagtt
gaagagtttaataagattaatgaagaacgtgttaaaaatggtgaatctgaatttgctaat
cctcgaaatgcagcagcaggcactttacgtcaattagattcaacaattgttgcaaaacga
aagttaaatgcatttttatattattatgttaatgctttacaggatgggattcaatcacaa
tacgaagcattacaaagattagaacaattgaaatttaaaacaaatcctgaatatcgttat
tgctcaaatattgcggcagtgtgagcatatattcaagaatatgagccaaaacgtcatcag
ttaggttatgaaattgatggaattgtgattaaagttaataacttaaatttatataatcgt
attggttatactgctaaaaatccaaaatgagcaatcgcttataaatttccagcggaagtt
gtggttactaaattgcttaatatttttccttccgttgggagaacggggcgcattacttat
aatgctgttcttgaaccaattcgtattgcaggaacaatcgtacgagctgcaacattacat
aatgctgattttattactgaacgtgatattcggattggtgataatgtccaagttaaaaaa
gcgggagatattattccagaagtaattaattatgttgcagctcgtcgccaaaaaaatgct
cagaagtgacaagaagcaacgcattgcccagaatgtaattctttattagaacgtgttgaa
ggggaggttgaccagtattgcattaattctgtttgtcccaaaaaaattacacgtggatta
gaacattattgttcacgaaatgcgatgaatattgaaggaattagtgaaaaaattattgaa
cgattatttaaattagaatatttaaaaagttttagtgatttatatcaattagaacaatac
cgcgctgaaattattgaattagaaaattttggtgaaaaatcgtttgaaaatatgattact
tcaattaataattcaaaaaataattccttagaacgactattatttgcgttaggaattcgt
catgttggtcaaaaaacagcaaaattattagcacgacaatttaaaacaattgataattta
gctgctatgaatattgaacaattatcaattattaatgatattggtccaattgtagcagct
agtgttgtggattattttgcaattccagctaaccaacaagaactggctttattacgccaa
aatggggttaaaatggagtattttgctactaatcagcatttagcacagaagtttgaaaat
tatcggtttgtgattactggagtcttatcaaaatcacgagaatactttaaagaattaatt
gaaagttatggtggacaagtttctgaaagtgttagtgcaaaaaccacttatttactggcg
ggaactgatgctggtaataaattagtaaaagcacaaaaattaaatgttaaaattattaat
gaagaagaatttcaacaattattaaataaggaggactaa

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