Streptococcus merionis: SAMEA4412692_0402
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Entry
SAMEA4412692_0402 CDS
T07119
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smen
Streptococcus merionis
Pathway
smen03030
DNA replication
smen03410
Base excision repair
smen03420
Nucleotide excision repair
smen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4412692_0402 (ligA)
03410 Base excision repair
SAMEA4412692_0402 (ligA)
03420 Nucleotide excision repair
SAMEA4412692_0402 (ligA)
03430 Mismatch repair
SAMEA4412692_0402 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smen03032
]
SAMEA4412692_0402 (ligA)
03400 DNA repair and recombination proteins [BR:
smen03400
]
SAMEA4412692_0402 (ligA)
Enzymes [BR:
smen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA4412692_0402 (ligA)
DNA replication proteins [BR:
smen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4412692_0402 (ligA)
DNA repair and recombination proteins [BR:
smen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA4412692_0402 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4412692_0402 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAMEA4412692_0402 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4412692_0402 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
SNU86852
UniProt:
A0A239SNL9
LinkDB
All DBs
Position
1:434405..436360
Genome browser
AA seq
651 aa
AA seq
DB search
MERIVELVAVLNRYAQAYYTEDQPLVSDSEYDRLYRELVDLEKQYPESVLPDSPTHRVGG
KILEGFEKYSHEYPLFSLQDAFSRSELDAFDQRVKKKFPQATYLCELKIDGLSISLTYVD
GVLTVGATRGDGTVGENITENLKRVADIPLRLPEPISITVRGECYMPRASFEKINQQRQE
AGEATFANPRNAAAGTLRQFDTNIVAQRGLATFLYQEASPTTSSSQSETLEKLADLGFVT
NPLHLLAADMDEVWDFIVRVEEQRHSLPYEIDGIVIKVNSLAMQEELGFTVKAPRWAVAY
KFPAEEKEATLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIADKDIRIGD
TVVVYKAGDIIPAVLHVVLRDRDSQEVMSIPKRCPSCKETLQRYDDEVALRCVNPLCPEQ
IKVRLAHFASREAMNISGLGPSIVDKFFVANLVHDVADLYRLSMEDLLTLPNIKEKSATK
LLAAIEQSKDNSADRLFFGLGVRHIGSKAAKLLLERFGSIDALAVATEADIAAIDGLGSV
VARSVKTYFETEGAQTLLAEFKVLGVNLAYKGFVAKADALLSGQTVVLTGKLERLTRSEA
KAKLEALGANVAGSVSKKTSIVVAGSDAGSKLSKAQELGIEIQDEAWLESL
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatcgttgaattagtcgctgtgcttaatcgatacgcacaagcttactacact
gaggatcagcctttggtgtctgatagcgagtatgatcgtctttatcgagaattggtcgac
ttggaaaaacaatatcctgaatctgtactgccagatagtccgacccatcgagttggcggc
aaaattttagaaggatttgagaaatattcccatgagtatccgctttttagtttgcaggat
gctttttctcggtcagagctggacgcctttgatcagagagttaaaaagaagtttcctcaa
gcgacttatctctgcgaactcaaaattgacggcttatctatttctctaacttacgtagac
ggcgttttgacggttggtgcaacgcggggggacgggactgtcggtgagaacatcacggag
aatctcaagcgtgtggctgatattcctttacgcttgccagagccaatctccatcacagtt
cgtggcgagtgttatatgcctagagcctcttttgaaaaaattaatcaacagcgccaagaa
gcaggagaagcaacttttgctaatcctcgaaatgcagcagcaggtacgctccgtcaattt
gacaccaacattgttgctcaacgcggtctagcaacttttctttatcaagaagccagtcca
acaacatcaagtagtcagtctgaaactctggaaaaactagctgatctagggtttgtaacc
aatcctcttcatcttttagcagctgatatggatgaggtatgggatttcattgttcgtgtg
gaagagcagcgtcatagtctgccctacgagattgatggcattgttatcaaggtaaattcg
ttagcaatgcaggaggagttgggcttcacggtcaaggcacctcgctgggctgtagcctat
aaatttccagcagaggagaaggaagcgacacttttatctgtagattggactgtggggagg
acaggagtggtgacacctactgccaatttaacgccagtccagctggcaggaacaacggtg
agtcgcgctactcttcacaatgtggactatatcgctgacaaggacatccgcattggtgat
acggtcgttgtctacaaggccggtgatattattcctgcggtgcttcatgtggttctgcgt
gatagagatagtcaggaagtcatgtctattccgaaacgttgtccgtcctgcaaggaaaca
ttgcaacggtatgatgacgaagttgctctgcgctgtgtcaatccactttgtccagagcaa
attaaggtgcgcttggctcattttgccagtcgtgaagctatgaatatctcaggcttgggc
ccatcaattgtagataaattctttgtagccaatttagtccacgatgtggctgatctctat
cgactgtctatggaggatttgctgaccttaccaaatatcaaggaaaagtcggcaacaaaa
ctcttggcagcgattgagcagtctaaagacaattcagctgatcgcctgttctttggactg
ggtgttcgtcacattggtagcaaggcagccaagttgctcttggaaaggtttggctctatt
gatgccttagcagtagcaacagaggctgacattgcagctattgatggtttgggaagcgtg
gttgctcggagtgtcaagacttattttgaaactgagggggctcagacgctcctagcagaa
tttaaagttttaggggtaaatttggcctataaaggctttgtagcgaaagcagacgccttg
ttgtcaggacagacagtcgtcttgactggtaaactagagagattgacacgtagtgaagct
aaggcaaaactagaagcattgggtgccaatgtggcgggttctgtatctaagaaaacttcc
atcgttgtcgctggttcagatgctggtagcaagctgtctaaggcccaagaattaggcatt
gaaatacaggatgaggcttggttagaaagtctctag
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integrated database retrieval system
