Silurus meridionalis (southern catfish): 124375525
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Entry
124375525 CDS
T08004
Symbol
tap1
Name
(RefSeq) antigen peptide transporter 1
KO
K05653
ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:
7.4.2.14
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo02010
ABC transporters
smeo04145
Phagosome
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124375525 (tap1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124375525 (tap1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124375525 (tap1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smeo02000
]
124375525 (tap1)
Enzymes [BR:
smeo01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
124375525 (tap1)
Transporters [BR:
smeo02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
124375525 (tap1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_15
ABC_ATPase
SMC_N
Motif
Other DBs
NCBI-GeneID:
124375525
NCBI-ProteinID:
XP_046689920
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Position
21:complement(16422993..16433951)
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AA seq
733 aa
AA seq
DB search
MKEKMAFYLFVFLLLCVDVSVVMTFGATRLSPFLLPHSFTTLWVGGILRFIALLLVFFFY
PSSPAWIKRSNGVQTLAVHSLVYPVYVTLLWACGWSTLELTWGWNTWQGLIQCYGVSALS
LLLWERYVPSILTKPEGKPKQNGQASLQRLLGYMKPYQRRFTAVLLLVVASSLGEMAIPH
YTGKITDWIMKEDEPDAFANAIKIMSILTALSAVFEFVCDLIYNTTMSLIHTAIQSQVFE
CVLKQEIAFFDQNSSGELVSRITKDTNDMSESLSEELSLLMWYTMRLVFLYGSMLLLSLR
LSIFTILGLPIIWIIPEFSGRFYQTHAVKVQESLAKSNSVATETFSSIKTVKSFANEDGE
SERYRKCLEHTYSLNKVEAAGYAASTWTNSMSSLALKVSILYYGGQLVAGNDVSSGDLVS
FVLYELQFSHAVEALMSYYPRVKKAVGASEKIFEYVDRKPDVPPDGSLAPKTLSGHVRFD
NITFAYPTRQDENVLKGVSLELKPGEITALVGPADGGKSTIVRLLERFYQPQDGKIFLDE
QPLQDYKDQYLHEKISVVAQEPVLFARSIRENIKYGKTDATDDEMYKAAKLANAHKFISD
FPQGYDTDAGEKGSKVSGGQKQRIAIARALIRNPQILILDDSTSDLDTESEHVVHQALLK
KSNGRSVLLITNKMSGVETANNVVFLRKGEVLEQGSHDDLLKRDGQYAEFVRLQNTSFHR
NAQEDSETSESTE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaaagatggcgttctatctgttcgtcttcctcctgttgtgcgtagacgtctcc
gtggtgatgacgttcggggcgacccgactctcgccttttctccttccacattcatttacc
actctctgggtcggagggattctgaggttcatagcccttctcctcgttttctttttttac
ccgtcgagcccggcgtggataaaaagatctaatggagtccagaccctggctgtgcacagt
ttggtctatccggtatacgtaacactgctgtgggcatgcggctggtcgacgctggagctc
acctggggatggaacacctggcaaggactgattcagtgctacggtgtttcggctctctcg
ctgctgctgtgggaacgctacgtgccctccatcctgacaaagcccgagggtaaacccaaa
cagaatggccaggcctcgctgcagaggctgctgggatacatgaagccgtaccagcgccgg
ttcacggcggtcctcctgctggtagtcgcttcctctctcggtgagatggctattcctcat
tacacggggaaaatcaccgactggatcatgaaggaggacgaacctgacgcttttgccaac
gccatcaaaatcatgtcgatcctgacggccttgagcgccgtgtttgagttcgtgtgcgat
ctcatctacaacaccaccatgagcctcatacacaccgccatccagagtcaggtgttcgag
tgtgtgctgaaacaggaaatcgcattcttcgatcaaaattcctcaggtgaactcgtgtcc
cgaatcaccaaagacaccaacgacatgagcgagtccctaagcgaagagctcagcctgctc
atgtggtacaccatgcgtttagttttcctctacggctccatgctgctcctctcattgcgc
ctgtccatcttcaccatcctcggccttcccatcatttggatcatcccagagttttccgga
aggttctaccagacacacgcagtcaaagtgcaggagtctctcgccaaatcgaacagtgtg
gccactgagacgttctcctccatcaagactgtgaaaagcttcgccaatgaggatggagag
tcggagagatacaggaagtgcttggagcacacctactccctcaacaaagtggaagcggct
ggttatgcagcttcaacctggaccaacagcatgtccagtctggccttgaaagtgagcatc
ttgtattatggaggccagctggtggcaggaaatgatgtcagcagtggtgatctggtgtct
ttcgtgctgtacgagcttcagtttagtcatgctgtagaggctctgatgtcctactaccct
cgagtgaagaaagccgtcggcgcctcagagaagattttcgagtacgtggaccggaaacct
gatgttcctcctgatggttctttagctcccaagactctcagtggtcacgtgcgctttgac
aacatcacttttgcgtatccgacgaggcaagacgagaatgttctcaaaggcgtttctctt
gagctgaagcctggagagatcaccgctctggtaggtccagcggatggcggtaaaagcaca
atcgtcaggcttctcgagaggttttaccagccacaggatggaaagatattcctggacgag
cagccgctgcaggactacaaggatcagtatctgcatgagaagatcagcgtggttgctcag
gagccggtcctgttcgctcgctccatcagagagaacatcaaatacggaaaaacggacgcc
acggacgacgagatgtataaggctgctaaactggccaatgctcacaaattcatcagtgac
tttccacaaggctatgacactgatgccggagaaaaaggaagtaaagtatccggaggtcag
aagcagcgaatagccatagcaagagccctgatccggaacccacagatcctcattctagat
gattccacgagtgacctggatactgagagcgagcatgtggtgcaccaggcgctgctgaag
aagtcgaacggtcgctccgtgctgctcatcaccaacaagatgagtggcgttgagacggcc
aacaacgtggtgttcctgcgtaagggagaggtgctggagcagggcagccatgacgatctg
ctgaagagggacgggcagtacgccgagtttgtgcgtctgcagaacaccagctttcatcgt
aacgctcaggaagacagcgaaacctccgaatcaacagagtaa
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