Silurus meridionalis (southern catfish): 124377185 Help Entry 124377185         CDS       T08004                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism smeo  Silurus meridionalis (southern catfish) Pathway smeo04115   p53 signaling pathway smeo04145   Phagosome smeo04148   Efferocytosis smeo04350   TGF-beta signaling pathway smeo04510   Focal adhesion smeo04512   ECM-receptor interaction smeo04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:smeo00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     124377185 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     124377185 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     124377185 (thbs1b)    04148 Efferocytosis     124377185 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     124377185 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     124377185 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     124377185 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:smeo04131]     124377185 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:smeo00536]     124377185 (thbs1b) Membrane trafficking [BR:smeo04131]  Endocytosis   Phagocytosis    Opsonins     124377185 (thbs1b) Glycosaminoglycan binding proteins [BR:smeo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    124377185 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 TSP1_CCN cEGF EGF Laminin_G_2 PHZA_PHZB Motif Other DBs NCBI-GeneID:  124377185 NCBI-ProteinID:  XP_046692514 LinkDB All DBs Position 23:complement(15628567..15638375) Genome browser AA seq 1169 aa AA seqDB search MKLTGIFLLVMLWSCDGARVAESRDDNSVYDLFELVQVPKKNHGVMLVKGEDPYSPAYKI MNPDLIPPVPEGAFRDLVDSVQAERGFLFLVNFKQARRTRGSLFTVEKRDGSGTLFEVVS NGKANTLDIVFATENKQQVVSMEEADLATGQWKNITLFVQEDRVHFYVGCEEVNNAELDA SIQSVLTLETPSVANMRIGKGAVNDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVTDIIT LHNPVNGSSPAIRTDYTGHKTKDLQMICGYSCEDIASMFKELKTLGVMVKDLTEKLRQVT TENTLLGGTLGRHSVCLHNGILHKNKEEWTVDDCTECTCQNSATICRKISCPLLPCANAT VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGKGVQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQMGGKECQGQGRQT EKCEKSPCPINGGWGPWSPWDTCSVTCGGGVQTRKRLCNSPPPKYGGKECVGDGKATQLC NKQACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPTGYTGNGIDCKDVDECKEVPDACFE FNGVHRCENTVPGYNCLPCPTRYNGPQPFGRGVEDAALKKQVCTPRNPCLDGSHDCNKNA RCNYLGHFADPLFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFVFNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGILNEMDNCPYLYNVDQKDTDQDGVGDQCDNCPLEHN PDQLDSDSDLVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDDND GIPDDKDNCRLVFNPDQLDTDGDGRGDVCKDDFDQDNVLDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPKTGHIRVVMYEGKKIMADSGRIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagttaacaggaatatttttattagtgatgctttggagctgcgatggcgcgagagtg gcagaaagcagagacgacaacagcgtttacgacctgttcgagctcgttcaagtgcctaag aagaaccacggggtcatgctggtgaagggagaagacccctacagtcccgcctacaagatc atgaacccagacctgatcccgccggtgcccgagggcgccttccgagacctggtggattcc gtgcaggcggagcgcggcttcctgttcctggtcaacttcaagcaggcgcggcgcaccagg ggctccctgttcaccgtagagaaacgcgatggctccggcaccctgtttgaggtggtctcc aacggcaaagccaacacgctggacatcgtgttcgccacggaaaataagcagcaagtggtg tccatggaggaagccgacctggccacgggtcaatggaagaacattacactcttcgtccag gaggacagggtgcacttttatgtcggatgtgaggaggtgaacaacgccgagctggacgca tccatccagagcgtgctcactctggaaaccccaagcgtcgccaacatgaggatcggcaag ggagccgtaaatgacagattcatgggtgtgcttcaaaacgtccggttcgtttttggcacc acgctggacgcaatactgaggaataaaggatgccaaaactccgttactgacatcataact ctacataatccggttaatggatccagccctgcaatcaggactgattatactggccacaaa acaaaagatttgcaaatgatttgtggctattcctgtgaggatattgctagcatgtttaaa gaactaaagaccctcggtgtaatggtgaaagatctgactgaaaaactacgccaagtgaca actgagaacactttgcttggtggaaccttgggaagacattcagtctgtttgcataatggc atattgcataagaacaaggaagaatggacggtggatgactgcactgagtgcacctgccag aactcagcgactatatgtcgtaagatttcctgtccgttgcttccctgtgccaatgcaact gttcctgatggggaatgctgccccagatgtggaactcccagtgactatgctgaagatggc tggtccccctggtctgaatggacccattgttctgtgtcctgtggaaagggcgttcagcag cgtggccgctcttgtgaccggatcaataacaactgtgagggcacatctgtacaaacaaga gactgctacctccaggagtgtgacaaacgctttaagcaagatggcagctggagccactgg tcaccatggtcctcttgctcagtaacctgtggatcaggagttatcacacgtattcgtctg tgcaactctcctactccccagatgggaggaaaagagtgtcagggccaaggcaggcagact gagaaatgtgagaagtcaccatgtccaatcaatggtggttgggggccatggtcaccttgg gatacctgttctgtaacctgtggcggtggtgtccaaactcgcaagcgtctttgtaatagt ccaccacccaagtatggtggcaaagaatgtgttggcgatggaaaggcaactcaactgtgc aacaagcaagcttgtcctattgatggatgtctatccaatccctgttttgctggagccaag tgtacaagctttccagatggttcttggaaatgtggaaaatgtccaacaggctacactgga aatggcattgactgcaaagatgttgatgagtgcaaggaggttcctgatgcttgcttcgaa ttcaatggagtccatagatgtgaaaatactgtacctgggtacaactgcttgccatgtcct acacgctacaatggtccacagccatttggccgtggagtggaggatgctgctttaaagaaa caggtgtgcacacctcgtaatccctgccttgatggaagccatgactgcaataagaatgcc cggtgcaactatttgggccattttgcagaccccctgttccgctgtgagtgcaagcctggc tatgctgggaatggacacatctgtggagaggacacagatctggatggctggccaaatgct gaccttgtttgtgtggagaatgctacctatcactgcaagaaggacaactgcccaaacctt ccaaattctggtcaggaggactatgataaggatggaattggcgatgcttgtgatgatgac gatgatgatgatggcatccccgatgacagggacaactgcccattcgtgtttaatcccaga cagtacgactatgaccgggatgatgttggtgaccgatgtgacaactgtccatacaatagc aaccctgaccagactgacacagacaacaatggtgaaggtgatgcatgtgccgtggacatt gatggagatggtattctaaatgaaatggataactgtccttatctgtacaatgtggatcaa aaagatactgatcaagatggagttggtgaccagtgtgataactgccccttggagcataat cctgaccagcttgattcagactctgacctggtaggagacaaatgtgacagcaatcaggac attgatgaagatggtcatcaaaacaacctggacaactgcccttatattccaaatgccaac caggctgaccatgacaaagatggcaaaggagatgcttgtgattatgatgatgacaatgat ggtatccctgatgataaagataattgtagattggttttcaatccagatcagctggacact gatggtgatggacgtggtgatgtttgtaaggatgactttgaccaagacaatgttctagac atctacgatgtctgcccagagaactttgacatcagtgagactgacttccgcaagttccag atggtgcctctggaccccaagggcacatcccagattgatcctaactgggtagtccgtcac cagggcaaagagttggttcagacagttaactgtgacccaggcattgctgttggttttgat gagtttaatgcagtggacttcagtggaaccttctttataaatacagagagagatgatgat tatgcaggatttgtgtttggttaccaatccagctcccgcttttatgtggtgatgtggaag cagataactcagacctactggtccagcacacccaccaaggcacagggttactcagggctg tcaatcaaagtggttaactcaaccactggaccaggggaacacctaagaaatgccctctgg catactggggatactcctggacaggtccgaactctctggcatgaccctaagaatgttggt tggaaggactttactgcctacagatggcatctgactcacagaccaaaaacaggacacata agggttgttatgtatgaaggaaagaagattatggcagattctggaagaatttatgacaaa acgtatgcaggtggacgactaggtctttttgtcttctcacaagagatggtatacttctcc gaccttaaatatgaatgcagagatgcttaa

DBGET integrated database retrieval system