Silurus meridionalis (southern catfish): 124378537
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Entry
124378537 CDS
T08004
Symbol
ggps1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00900
Terpenoid backbone biosynthesis
smeo01100
Metabolic pathways
Module
smeo_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
124378537 (ggps1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
smeo01006
]
124378537 (ggps1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
124378537 (ggps1)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
124378537 (ggps1)
2.5.1.29 geranylgeranyl diphosphate synthase
124378537 (ggps1)
Prenyltransferases [BR:
smeo01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
124378537 (ggps1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
GCSF
Motif
Other DBs
NCBI-GeneID:
124378537
NCBI-ProteinID:
XP_046694210
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All DBs
Position
2:25858579..25868252
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AA seq
298 aa
AA seq
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MDNLEEEATERILLEPYNYLLQLPGKQIRTKLSQAFNHWLNVPEDKLQVIIEVTEMLHNA
SLLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLEHPEAVHVFTRQL
LELHRGQGLDIHWRDTYTCPSEAEYHGMVLRKTGGLFGLAVGLMQLFSEWSCDLKPLLDT
LGLLFQIRDDYANLCSREYGANKSFCEDLTEGKFSFPTIHAIRTQLHSTQVQNILRQRTE
DEDVKRYCVDYLEKVGSFAYTKKKLHELEKEAYRLIAELGGNPELEGLIEHLSHIFKE
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggacaatcttgaggaagaagctactgaaaggattctgcttgaaccatataactacctg
ctgcaactaccaggaaaacaaatccgaaccaaactgtcccaagctttcaaccactggctc
aatgtacctgaggataaactccaggtgatcattgaggtaacagaaatgctgcataatgcc
agtctcttaattgatgacattgaggacagctccaagttgcggcgtggtttcccggtagct
cacagcatctatggtgtaccgtcagttataaactctgcaaactatgtctactttcttggc
ctcgagaaggtgctgacgctggaacatcctgaggctgtgcatgtgttcactcggcagctg
ctagagctgcatcgtggccaaggtctggacatccactggcgtgacacatacacttgccca
agtgaagcagagtaccatggcatggtactacgcaagactggtggattattcggcctagca
gtgggcctcatgcagctgttctcagaatggagctgtgaccttaagcccctactagacaca
ctcgggctcttgttccagatacgcgatgactatgccaacctctgctcacgtgaatatggt
gcaaacaagagcttctgtgaagacctgactgagggaaaattctcctttcccaccattcac
gccattcgtacacagcttcatagcacacaggtgcagaacattttacgccagcgcacagag
gatgaagatgttaagcgttactgtgttgattatttggagaaagtgggctcttttgcttac
actaaaaagaagctgcatgagctagagaaggaggcatacagactgattgcagaattaggg
gggaacccagagctggagggacttatagaacatctcagccacattttcaaggaatga
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