Silurus meridionalis (southern catfish): 124380029
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Entry
124380029 CDS
T08004
Symbol
nr1h3
Name
(RefSeq) oxysterols receptor LXR-alpha
KO
K08536
liver X receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03320
PPAR signaling pathway
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124380029 (nr1h3)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
124380029 (nr1h3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124380029 (nr1h3)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124380029 (nr1h3)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124380029 (nr1h3)
Nuclear receptors [BR:
smeo03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
124380029 (nr1h3)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
124380029
NCBI-ProteinID:
XP_046696658
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Position
26:5739081..5762621
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AA seq
446 aa
AA seq
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MMTTLSATDNADVAHGANLGCVTEEGSVSSAEVKHELHTSPSQPVLFTSSPKELHDKLHM
DPSNVKPDPSADTPAPENQPMKRKKGPAPKMLGNEVCSVCGDKASGFHYNVLSCEGCKGF
FRRSVIKGAQYVCKNSGRCEMDMYMRRKCQQCRLRKCREAGMLEQCVLSEEQIRLKKMKK
QHEEDAARGSAVATPSPAVDIPPLAPEQQEMIEKLVSMQKQCNKRSFIDRRKVTPWPQSQ
DPMNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTREDQIALLKTSTIEIMLLET
SRRYNPAIESITFLTPDFSYNKDDFAKAGLQIEFINPIFEFSKGMNDLHLDEAEYALLIA
INIFSADRPNVQDHDLVEKLQQPYVDALNSYIRIKRPNDHLMFPRMLMKLVSLRTLSSVH
SEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccaccctttctgcgactgataatgctgatgttgctcatggggcgaatctgggg
tgtgtcactgaggaaggctcagtgagttcagcagaagtgaaacatgagttacacacttct
cctagtcaaccagttttattcaccagttctcctaaagagctgcacgacaagctacacatg
gaccctagcaatgtcaaaccggatccctctgcagacacacctgcgccagagaaccagcca
atgaaaaggaagaaaggtccagctcctaagatgcttgggaacgaggtgtgtagcgtatgt
ggggacaaggcttccggtttccactacaacgtactgagctgtgagggctgcaagggcttc
ttcaggcgcagcgtaatcaaaggagcgcagtacgtctgcaaaaactcgggacgttgcgag
atggacatgtacatgcggcgaaagtgtcagcagtgtcgactgcgcaagtgtcgggaagcc
ggcatgctggagcagtgtgtgctttcggaggagcaaattcggttgaagaaaatgaagaag
cagcatgaggaagatgcagctcgaggctcggccgtggctacacctagcccagcggttgac
atcccccctttggctccagagcagcaggaaatgatcgagaagttagtctccatgcagaaa
cagtgcaacaaacgctcctttattgaccgccgcaaagtcactccatggccacagagtcag
gacccgatgaaccgggaggtacgtcagcagcgctttgctcatttcaccgagctggcgatc
atgtcggtgcaggagatagtggacttcgcgaaacagctgcctggtttcctggagcttacc
cgggaggaccagatcgccctgctcaaaacctccaccattgagatcatgctgctagagact
tctcgccgctacaatccagcgatcgagagcatcactttcctcacaccggacttcagctac
aacaaagacgacttcgccaaagcagggctgcagatcgagttcattaaccccatcttcgag
ttctctaagggcatgaacgacttgcacctggatgaagcagagtacgcgctgctcatcgcg
ataaacatcttttcagcagaccgacccaacgtgcaggatcatgatttggtggagaagctc
cagcagccgtatgtggacgctctgaattcgtacatcaggatcaaaagaccaaatgatcat
ctgatgttcccacgtatgctgatgaagctggtcagtctgcgtaccctgagtagcgttcac
tctgagcaggtcttcgctttgcgactgcaggacaagaaactcccccctcttctgtctgaa
atctgggatgtccacgaatga
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