KEGG   Silurus meridionalis (southern catfish): 124382038
Entry
124382038         CDS       T08004                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo04010  MAPK signaling pathway
smeo04060  Cytokine-cytokine receptor interaction
smeo04150  mTOR signaling pathway
smeo04210  Apoptosis
smeo04217  Necroptosis
smeo04350  TGF-beta signaling pathway
smeo04620  Toll-like receptor signaling pathway
smeo04621  NOD-like receptor signaling pathway
smeo04622  RIG-I-like receptor signaling pathway
smeo04625  C-type lectin receptor signaling pathway
smeo04920  Adipocytokine signaling pathway
smeo05132  Salmonella infection
smeo05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    124382038 (tnfa)
   04350 TGF-beta signaling pathway
    124382038 (tnfa)
   04150 mTOR signaling pathway
    124382038 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    124382038 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    124382038 (tnfa)
   04217 Necroptosis
    124382038 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    124382038 (tnfa)
   04621 NOD-like receptor signaling pathway
    124382038 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    124382038 (tnfa)
   04625 C-type lectin receptor signaling pathway
    124382038 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    124382038 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    124382038 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    124382038 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:smeo04052]
    124382038 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:smeo00536]
    124382038 (tnfa)
Cytokines and neuropeptides [BR:smeo04052]
 Cytokines
  Tumor necrosis fators
   124382038 (tnfa)
Glycosaminoglycan binding proteins [BR:smeo00536]
 Heparan sulfate / Heparin
  Cytokines
   124382038 (tnfa)
SSDB
Motif
Pfam: TNF DUF7600
Other DBs
NCBI-GeneID: 124382038
NCBI-ProteinID: XP_046700075
LinkDB
Position
29:complement(8444767..8446546)
AA seq 229 aa
MASDSQVVLDVDAPRVMLVREKAGSASGIWRTCGVLLAVALCAAAAVCFTQNKTQSSPDE
TQEIKHSLRQISGSAKAAIHLSGRYNDQISNTSVQWLNNADQSFVSGLKLENNEITIFHS
GLYFVYSQASYRLSCTTNDEEAEGQVLHLSHSVKRKSDSYGSWKPLLSSTRSACKLTTDD
ELTYWYGTIYVGAAFKLKAGDRLCTVMDNKLLSNVETAGGKTFFGAFSL
NT seq 690 nt   +upstreamnt  +downstreamnt
atggccagtgatagtcaagttgtgctggatgtagatgcaccccgggtgatgcttgtacgt
gagaaggccgggtctgcttcaggaatctggagaacgtgtggagttcttctggctgtggcc
ctctgtgccgctgccgccgtttgctttactcaaaacaagacacagagtagcccagatgaa
acccaagaaatcaagcactcgctgaggcaaatttccgggtctgcgaaggcagcgattcat
ctctcaggtcgctacaatgaccagatttcaaacacatcggtgcagtggctcaacaacgcc
gaccagtctttcgtttctggcctcaaactagagaacaacgagatcacgattttccacagc
ggcctctacttcgtctacagccaggcctcataccgactgagctgcacgaccaatgacgag
gaggcagagggccaggtgctgcacctgagccactccgtgaagcgcaagtctgactcctat
ggctcatggaagccgctgctgagttccacgaggtcggcctgcaagctaacaacagacgat
gaactcacatactggtacggcaccatctacgttggagctgcgttcaaactaaaggccgga
gaccgactgtgcaccgtcatggacaacaaactgctgtccaatgtggagaccgccggcggg
aaaacgtttttcggcgcattctctttataa

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