Silurus meridionalis (southern catfish): 124383164
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Entry
124383164 CDS
T08004
Symbol
rapgef4a
Name
(RefSeq) LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 4
KO
K04351
Rap guanine nucleotide exchange factor 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04081
Hormone signaling
smeo04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
124383164 (rapgef4a)
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
124383164 (rapgef4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124383164 (rapgef4a)
Membrane trafficking [BR:
smeo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
124383164 (rapgef4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
cNMP_binding
DEP
RasGEF_N
RA_2
Motif
Other DBs
NCBI-GeneID:
124383164
NCBI-ProteinID:
XP_046701542
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All DBs
Position
3:18378163..18414058
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AA seq
1009 aa
AA seq
DB search
MISPKMVAAHTSAHSSASAEWIACLDKRPEERSGEDVDIIMARLKRVKAFEKFHPTMLQQ
ICLCGYYECLEKGITLYRQGDIGTSWYTVLSGSLDVKVSETANHQDAVTICTLGIGTAFG
ESVLDNTPRHATIVTREFSELLRIEQREFRSLWEKYRQCMAGLLAPPYGAMESGPSADRM
PDKENLGNSLGSMSRHLNKVPLGKIMRAGKVLRNAILTQAPHMIRDRKYHLKTYKRCCVG
TELVDWQMQQSSCVHTRVQAVGMWQVLLEEGVLNHVDQELNFQDKYLFYRFXDDEQDDAP
VPSEEEKKESEEELQDTLLALSQMGPDAHMRMILRKQPGQRTVDDLEIIYEELLHIKALS
HLSTTVKRELAGVLIFESHAKAGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEG
DDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHEADVLVLE
KSHIRSSSHAGSSPLKYTVMSGTPEKILEHFLETMKLDSKFTESDPALDDFVLMHCVFIP
NKQLCPLLTAHYQAQVSQGSDQERLDYALNNKRRVIRLVLQWAAINTPHLQEEESSLAFL
QDFYMAVSEDAKLIPALKDQLPELETVLKQNSDDANPSQKKHKVLLRQFSMGDEKLQKRQ
PIKSTDEILFKVYCCDHTYTTIRVPVSACVRDVVSAVSDKLGSQENLLLIHLNSAGDKVV
LKPNEVSIFSSLSINGRLFVCSREQIHSLSPLPEQEGPAAGSMSTLELMSSKEVAYQMTL
YEWELFNCVHEHELIYHTFGRQHFKKATANLDLFLRRFNEIQLWVVTEVCLCSTLSKRVQ
LLKKFIKIAAHCKEFRNLNSFFAIIMGLSNPAVSRLNQTWEKLPSKFKKVYAEYENLMDP
SRNHRAYRLTVAKLDPPIIPFMPLLIKDMTFTHEGNKTFVDSLVNFEKMRMIANTVRIIR
YCRSQPFNHEAPQATKNHQDVRLYVRQISVIDNQRTLSQLSHKLEPRRP
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgatctctccaaagatggtagcagctcacacctctgctcattcctcagcatctgcagaa
tggatagcgtgtctcgacaaacgaccagaggagcgctctggggaagatgtggacattatc
atggctcgtctgaagcgggtgaaagctttcgagaagttccaccccactatgctacaacag
atctgtctatgtggctactatgagtgcttggaaaaaggcatcacattgtaccgacaggga
gatatcggcactagttggtacactgttctctccggctcgctagatgttaaagtctcggaa
accgcaaaccatcaggatgcagttaccatttgcacactgggcatcggcacagcatttggg
gagtccgttttggacaatactccacgtcacgccacgatcgtaacgcgagagttcagcgag
ctgctgcgcatcgagcagagggagttcagaagcttgtgggagaagtatcgtcagtgcatg
gcaggtctcctggcccctccctatggtgctatggagagtgggcccagtgctgacagaatg
cctgacaaagagaatctaggtaactccctaggatcaatgtccagacatctaaataaggtt
cccttggggaagatcatgcgggcaggtaaagtgctaaggaatgccatcctcacccaagca
cctcacatgatccgggacaggaaataccacctaaaaacctacaagcggtgttgtgtaggc
acagagctggttgactggcagatgcagcagagttcctgtgttcacacacgggttcaggct
gttgggatgtggcaggtgttgctggaggaaggagtcctcaaccacgttgatcaggagctg
aatttccaggataagtacctgttctatcgtttcntggatgatgagcaggatgatgcgcca
gtccccagtgaagaggaaaagaaagagagtgaggaggaactgcaagacaccctccttgcc
ctgtctcagatgggccctgacgctcacatgcgaatgatccttcgaaaacagcctggccag
agaacagtagatgatttagagattatttacgaggaactgctacatataaaagccttatct
cacctttctaccacagttaaaagggagttagctggcgttcttatttttgagtcccatgca
aaagcaggaacagtattgtttaaccagggagaggaagggacctcatggtacatcatcctg
aagggttcagtaaatgtggtaatttatggaaagggagtggtttgcacactgcatgaaggg
gatgattttgggaagctagctctggtaaatgatgcaccacgtgcagcctccatcgttcta
cgagaggacaactgccactttctgagggtggataaagaggattttaacaggatcctcagg
gatgtagaggcaaatacagtgcgattaaaggagcatgaagcagacgttctagttcttgaa
aagagccacatcagaagctccagccatgcaggctcctcaccactcaagtacactgtgatg
tctggaactccagagaagattcttgaacacttcctagagaccatgaaactagattccaag
tttacagagtcagatccagcattggatgactttgtgcttatgcactgtgtttttatcccc
aataagcaactgtgtccactccttacggcccactaccaggcgcaggtgtctcagggcagt
gatcaggagaggctggactatgctctgaacaacaagcggagagtcattcgtctggtgctg
cagtgggctgccattaacaccccccacctgcaggaggaggagagctctctggctttcctc
caggatttttacatggcagtgtctgaagatgccaaattaattcctgcactcaaagatcaa
ctccctgagctggaaactgtcctcaaacagaattcggatgatgcgaatccctctcagaaa
aagcacaaagtgctccttcgccaattcagcatgggagatgaaaaactgcaaaaacgtcag
ccaatcaaaagcactgatgagattctgtttaaggtgtactgttgtgatcacacttacacc
accatcagagtgcctgtatctgcttgtgtcagagatgttgtgtcggctgtatcagataaa
ctgggctcacaagaaaaccttctcctgattcacctcaactcagctggtgataaagtggtc
ctgaagcccaatgaagtgtccatcttctcctccctcagcattaatggtcgtctctttgtc
tgctctagggagcagattcactccttgagtccactaccagagcaagagggaccagctgct
ggctccatgtccacccttgagctaatgagctccaaagaggtggcctaccagatgaccctt
tatgaatgggaacttttcaactgtgtgcatgagcacgagctgatttaccacacgtttggc
cggcagcacttcaaaaaggcgacagccaacctagatctctttctacgccggttcaatgag
atccaactgtgggtggtgacggaagtatgtctttgctccacccttagcaaacgtgtccag
ctgcttaagaaattcatcaagattgctgcccactgtaaagagtttagaaatctgaactcg
ttctttgctattataatgggattaagtaatccagcagtcagccggctaaaccagacgtgg
gagaaactgcccagcaagtttaaaaaggtttatgcagagtatgaaaacctgatggacccc
tctagaaaccacagagcttaccgcctcactgttgctaaactagatcctcccatcatcccc
ttcatgcctttactgattaaagatatgacgtttactcatgaaggcaacaagacatttgtt
gacagtttggtgaactttgagaaaatgcgaatgattgccaacacagtgcggataataaga
tactgcagaagtcaacccttcaaccatgaagctcctcaagccaccaagaaccaccaggat
gttcggctctatgtgcgacaaatcagtgtgattgacaaccaacgtactctttcccaactt
tctcacaagctggagccccgacgcccctga
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