Silurus meridionalis (southern catfish): 124386311
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Entry
124386311 CDS
T08004
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124386311 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124386311 (tdg.1)
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
124386311 (tdg.1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
124386311 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
124386311
NCBI-ProteinID:
XP_046706017
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Position
5:complement(23188527..23195437)
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AA seq
430 aa
AA seq
DB search
MDERSYGSLPHVPSDYVQHWVQSAQQHLQALHAQHSYMANGNVAHFMEGHGEEPGMMEMP
VHEPPAAPQETGAPQEAPTKGKRGRAANKQPRAKPGPKPKKAKVEKEAQPAEGAQEKIDE
SFKKVKRKIDRFKGMSEEEVMKRTLPDILIPNLDYVIIGINPGLMAAYIGRWFPGPGNHF
WKCLFLSGFTEQLLNHMHDQTLPEKYSIGFTNMVERATPGSKDLSSKELREGGKILVEKI
KQFKPLIAVFNGKCIYEMFCRELFGKKPKTLEFGLQPHKIPDSDTALYLMPSSSARCAQF
PRAQDKVHFYIKLRELRDQLRGMAKPKDIEEVKYTFDLGMAKEDAKRMAIKEEQYDPGYE
AAFGGQYGEPGLEGGNGHCAFASGEAEAAEKESGESNAMGQLPDGQWMTNSFADQIPEIG
SSSQAQTGAV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagaagttacggatctttgccccatgtgccctcggattatgttcagcactgg
gttcagtctgcacagcaacacctccaagcccttcatgcacagcattcttatatggctaat
ggtaacgttgcacacttcatggaaggacacggagaagaacccggaatgatggaaatgccc
gttcatgagccgcctgcagcaccgcaggagaccggtgctccccaggaggctcccactaaa
gggaagaggggcagagctgcaaacaaacagccaagagccaaaccaggtcccaagcctaag
aaggctaaggtggaaaaagaggcccaaccagctgaaggagcacaggagaagattgacgag
tccttcaagaaagttaaaaggaaaatcgatcgctttaagggcatgtccgaggaggaggtt
atgaaaagaactctgccagatatccttatacccaacctggactatgtaattattggaatc
aatccaggtctgatggctgcctacattggaagatggtttcctggacctgggaaccatttt
tggaagtgccttttcctctccggtttcactgaacagctgctgaaccacatgcacgaccag
actctccctgagaaatacagcattggcttcacaaacatggtggaaagagcaacaccagga
agcaaagacctctcaagtaaagagctccgtgaaggtggcaaaattttagtggagaagatt
aaacagtttaaacccctcatagcagttttcaatggaaaatgtatatatgaaatgttctgc
cgagagctatttgggaaaaagcccaaaactctggaatttggcttgcagccacacaagatt
cctgactctgacacggcgctgtatctaatgccctcctcaagtgcccgctgtgcccagttc
cctcgagctcaggacaaagtgcatttctacatcaagcttagagaactccgagaccaactg
aggggcatggccaaaccaaaggatatcgaggaagtcaagtacacctttgatcttggcatg
gctaaagaggatgctaagagaatggccattaaggaggagcagtacgatcctggttacgag
gctgcatttggagggcagtatggggaacctggattggagggaggcaatggccactgtgcc
tttgcttctggagaagcagaagcagcagagaaggagtctggggaatccaatgcaatgggc
cagcttccagacggccagtggatgaccaactccttcgctgatcagattccggagatcgga
agctcgtcacaagcgcagactggggccgtatga
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