Silurus meridionalis (southern catfish): 124387815
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Entry
124387815 CDS
T08004
Symbol
sharpin
Name
(RefSeq) LOW QUALITY PROTEIN: ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K20894
shank-associated RH domain-interacting protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04217
Necroptosis
smeo04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
124387815 (sharpin)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
124387815 (sharpin)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124387815 (sharpin)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
124387815 (sharpin)
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Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
PH
Motif
Other DBs
NCBI-GeneID:
124387815
NCBI-ProteinID:
XP_046708372
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Position
6:complement(26721429..26730681)
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AA seq
429 aa
AA seq
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MALSSGVWAPVFPSPALQQGSNASSGSGCGTVLMSVRVSVSWATLRALRPLRSSGTVEDD
SALRLQLSMDPNRPGDFRLTLRDSGSNGRIMSLAEFELCAVRYEIKSPRCHELCVIKPPH
DTLTFTFRSEQEAQEWATVMISSLREAHRVAGIASHPTDDTEHLKPVEQSAALCLSAKEE
LCAELARAIEAGDAQAAKQHATSLAHQQMALTIQPAPKESEDEEISLAVAVEDATSSCCV
TVKVVPHMTVASLKQQMFGEYGFXPRVQRWVIGQCLCSEQRSLVSYGVCRDGDTAFLYLL
SARHARLSRLQCQQDQESALLAPVPKLTPTPAPASHDWRGYSTLPPRLHHSNTGSGGGGA
GKHSISDIMNLERLQLGVPGVRPTNPQAGWSCPSCTFINKSTRPGCEICSTERPTRPELG
ASEEAALLL
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctctgagttcgggggtttgggctccggtttttccgtctccggcactccagcaaggc
tcgaacgcgagctcggggtccggctgcggcacggtcttgatgtcggttcgtgtgtcggtg
tcgtgggcgacgctgcgagctctgcggccgctccgctcttccggcaccgtggaggatgac
tcggctctccgcctgcagctcagcatggacccgaaccggccaggagacttccggctcacc
ctcagagactccggcagtaacggcaggatcatgtcactggcagagtttgagctgtgtgca
gtgaggtacgagatcaagtcgcctcgctgccacgagctgtgcgtcatcaagccgccgcac
gacacgctgaccttcacctttcgcagcgagcaggaggcccaggagtgggccaccgtcatg
atatcatcactgagggaagcccacagagtcgcaggcatcgcctctcatcccactgatgac
acggaacatctaaaacctgtcgagcagagcgcagcattgtgcttatcagcaaaagaggaa
ctatgtgcagagctggccagagccatcgaggccggagatgcacaagcagcaaagcagcac
gctacatcactggcgcaccagcagatggcgctcaccatccaaccggctccaaaggaatct
gaagatgaagagatcagcttagcagttgcagttgaagatgccacgtcgtcctgttgcgtc
acggtaaaagtggtcccccacatgactgtggcgtctcttaagcagcagatgtttggagaa
tacggttttncaccccgagtgcagcgctgggtcataggtcagtgtttgtgctccgaacag
cgctccctggtgtcatacggcgtctgccgagacggagacactgcgtttctctacctcctc
tcagcacgccacgcccgcctcagccgactgcagtgccagcaggaccaggagagcgccctc
ctcgcacccgtgcctaaactgaccccgaccccggcaccagccagtcacgactggagagga
tacagcacactgccaccaagactccatcattccaacacaggaagcggtgggggcggagct
ggaaagcacagcatcagtgacatcatgaacctggagagactgcagctaggtgtacctggg
gtgagaccaacaaacccgcaggcgggttggtcatgtccttcatgtacgtttataaacaag
tcgacaaggcctggctgtgaaatctgcagtacagagagacccactcggcccgagctcggc
gcgtccgaggaagcggctctgcttttataa
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