Silurus meridionalis (southern catfish): 124388778
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Entry
124388778 CDS
T08004
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03440
Homologous recombination
smeo03460
Fanconi anemia pathway
smeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124388778
09124 Replication and repair
03440 Homologous recombination
124388778
03460 Fanconi anemia pathway
124388778
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124388778
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124388778
03036 Chromosome and associated proteins [BR:
smeo03036
]
124388778
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124388778
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124388778
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124388778
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124388778
Multi subunit type E3
BRCC complex
124388778
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124388778
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
124388778
BRCA1-A complex
124388778
BRCA1-B complex
124388778
BRCA1-C complex
124388778
BRCA complex
124388778
FA (Fanconi anemia) pathway
Downstream FA components
124388778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-RING_2
TRAF3_RING
zf-RING_UBOX
RTT107_BRCT_5
RING_XB3-XBAT31
zf-rbx1
zf-RING_10
zf-ANAPC11
Baculo_IE-1
zf-Nse
zf-P11
Motif
Other DBs
NCBI-GeneID:
124388778
NCBI-ProteinID:
XP_046709754
LinkDB
All DBs
Position
7:547223..565692
Genome browser
AA seq
1322 aa
AA seq
DB search
MIAAQDTSGSACAFLHVLLVYDSLDLMNEPVSTRCDHQFCRFCMAKLLERSKRKEASCPI
CKTKVTKRSLQESPGFQKLVEGLRNLVQSYEYDTGTNYFTGFPQRRRSTSVETESRDQQG
SGGNTSETEKEATPSSSAAAKDAFAKLMCLEDSGADAPQQLSSHTSPADSAQKPAGAPLR
TRGADSAGVETEEAPGDVKPSLRRSKRLGLEPDRIPDQRQKKSVQKVSEWLLKISPTADE
STVAGDRPGFPESDAEEGSTASRASTEIHDVAMPSPVREAPCRGLEERVFGAVYKRERRV
SKTLKVTRGFSPEREILTPKRRSSRKSTPADFIRRTSNEDKEDGDQQEEPDKTKKEEKPL
SSSDQEEPVVQSENMKESPEFEVPLKKPWRRSKMQEVWKVDRDLTEKENADKKKDGNRRV
TRSSRDPTKQDESEKSKNAKCALDLIRAGSEDLDLMEKVPQNPKVIKTEVDIESYPSSAD
PKSPDARKTRRSARLQEFTAEVRGPPSRRRVKPGLLKRDEGPENNPPPNPHEPNAEAESS
VRRNGCVYNNDLENIEAVQSSEDPSIKCPSQENVAEDVSLVPDTVDQDENVVAHSPRVAE
FEAGPVPESLPQKCQESPSPKTFPPGDPEQEDDTNDSELDTEQLMKTFKTTKRKSFYLGS
PSHSRAQEKSLTQISEEDQQENVDHAEIPPNCVDPDHGLAPNACEIAPREVSSPTAQSGA
ADVLSVSLLQVTSADVPGLPEDPNSVKASGASEHPEKVQDYRPPLNTELGNSVQLFSAST
TQEEPRGSHRKISSPEIQGNQVSSISLGRSSEILCNNLESSVTPDGLVPEVLVMKPATND
NLDEMDEGEIPSQPRVCRKRKAQRLESSDSESSVENDDLPPLAQILKSHRPPSDDLVKIQ
AEEPNPKPGLGPGSQESRSHSEPEAQSSPSQCIAPYQKPGSLQDLNSNGVQDGAPDPPCR
DDWMTSSQGSVDLFGTPRQCDEADHGVCGNTEISGESSQFSSEIINTQQREEMQQELHRL
ERMMALVSDALQKKDGDLSDKTKMEDDDVQSGQRGRMRSQRGCRSGRQASERSEVGGQRS
EGSAVEVNVEKDASELRGRGVGECSGKKECWTGSGGRMEMVMSGLSANEQGLVKKFARKM
KAGVSSQVTPTTTHIIIKTDGDLVCERTLKYFQGIAGRKWMVSFLWISECFKHSKLLTEA
PYEVCGDVVNGRDHNGPRKARTAHNLLMKGCEICFQGSFTDMTSDQMEVMVEQCGATVMK
DPLMFSRKDQDICYQVVVVQPGPDDSQSYYTALQKKATVVTRNWLLDSLSTYTLQNPLHY
KP
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgctcaggacacatcaggttctgcttgtgcttttttgcatgttctccttgtg
tatgacagtttggacctgatgaatgaacccgtctcgacccgctgtgaccatcagttctgc
aggttctgcatggcgaagctgcttgagagaagtaagagaaaagaggcgagctgtcccatc
tgcaagaccaaagtcactaagaggagtctgcaggaaagtccaggcttccagaaactggta
gaaggtctgcggaatttggttcagtcttatgaatatgacacaggaacaaactatttcact
ggtttcccccagaggagacggagcactagcgtggagacggagtcgagagatcagcagggc
agcggaggaaacacctcagagacggagaaggaagcgactccgtcctcctcggcagcagct
aaagacgctttcgcaaaactcatgtgtttggaggattcgggtgccgacgccccacaacaa
ctctcctcacacaccagtcctgccgattcagcacaaaaacctgcaggtgctccactgaga
acacgaggtgctgattcagcaggtgtggagacggaggaggctcctggtgacgtgaaaccc
tctctcaggagatccaaacgtctcggtctggagccggacagaattccagatcaaagacag
aagaaaagcgtgcagaaagtgtccgagtggctgctgaagatttctccgactgcagacgaa
agcaccgtggcaggagatcgtccaggtttcccagagagcgacgctgaagaagggagcacg
gcttcacgcgcgtccacggagatccacgatgtcgccatgccgagtcctgtaagagaagct
ccttgtcgaggtctggaggaacgagtgttcggtgcggtgtataaacgcgagcgcagggtc
tccaagaccctcaaagtcaccagagggttttctccagaacgagagatcctcacgcctaaa
aggaggtcaagccgtaaatccactccggcggattttatcaggaggacgtcgaatgaagat
aaagaagacggagatcagcaagaggaacccgataaaacaaagaaagaagaaaagccgtta
agttcttcagaccaggaggaacccgtggtgcagagtgaaaatatgaaagaaagtccagaa
tttgaggtccctttgaagaaaccatggagaagatctaagatgcaggaggtctggaaagtg
gaccgtgatttgaccgagaaagaaaacgcagacaagaagaaagatgggaatagacgggtc
actaggagcagccgagaccctactaaacaggacgaatcggaaaaatccaaaaacgccaaa
tgcgccctcgatctaatccgtgctggatctgaggaccttgacctgatggagaaggttcca
caaaatcccaaagtcatcaagactgaagttgatatcgaaagttatcccagtagtgcagat
ccgaagtctcctgacgctcggaaaaccagacggagcgcaaggctgcaggagtttactgca
gaagtccgaggtcctccgagcagacgacgagtgaaaccaggactcctcaaacgtgatgaa
ggacccgagaacaatccacctccgaacccgcatgagccgaatgctgaagcagaaagttct
gtgaggagaaatgggtgtgtttacaacaacgaccttgaaaacatcgaagccgtgcagtca
agcgaggatccatccatcaagtgtccatctcaggagaacgtagctgaagacgtttccctc
gtcccagacacggtggatcaggacgagaacgtcgttgctcattctcccagagttgcagaa
tttgaagcaggtcctgttcctgaatctttaccgcagaaatgtcaggaatcaccatctccc
aaaacgtttccacctggtgatccagagcaagaagacgacaccaatgatagtgaactcgac
acggagcaactcatgaagaccttcaagaccactaagaggaaatccttctatctgggtagt
ccctcacactccagagcccaggagaaatctctcactcagatttcagaggaagaccagcag
gagaacgtagatcatgctgagataccacctaactgtgtggaccctgatcacggtctcgcc
ccaaatgcttgtgagatagcacctcgggaggtatcatctccgacagctcagagcggtgct
gcagatgttctgagcgtcagtctgcttcaggtaacatcggctgatgttcccggtcttcca
gaagaccccaattctgtcaaagcatcaggtgccagtgagcatcctgagaaggttcaagat
tacaggcctcctttgaatactgagctcggaaattcggtccaacttttctctgcaagcacg
acccaggaggaaccacgaggctctcacaggaagatctcatctccagaaatacaaggcaac
caagtttccagcatctcgttgggaagatcctcggaaattctgtgtaacaacctggagtcc
tcagtcacccctgatggtctggtacctgaagttttggtcatgaaacctgcaaccaatgac
aacctggatgagatggatgaaggtgaaattccatctcagccacgagtctgtaggaagaga
aaagcccagagactggagtcttcagactcggaatccagtgttgagaacgacgacttgccc
ccattagcccagatacttaaatctcaccgaccaccttctgatgatctggtgaagatccaa
gctgaagaaccaaacccaaagcctggtttaggtcctggaagtcaggagagccgctctcac
agtgaaccagaagctcagtcaagtccaagtcagtgcatcgctccgtatcagaaacccgga
tctctacaagatctaaactcgaatggtgtccaggatggagctcctgatccaccttgcaga
gatgactggatgacgtctagccaaggatctgtggacctttttgggacaccacggcaatgt
gatgaagctgaccatggtgtttgtggaaacactgagatctccggcgagtcttctcagttc
tctagtgagatcattaacacccagcagagagaagagatgcagcaggagctgcacaggctg
gagagaatgatggctctggtgtctgacgcgctgcagaagaaagacggagacttgagcgat
aaaactaagatggaggacgatgacgtgcaatcaggacagcgaggcagaatgagaagtcag
cgaggctgtaggagtggaagacaagcttctgagcggtcagaggttggaggtcagcgttct
gagggttcagctgtggaggtgaacgtggagaaggatgcgagtgagctgagaggacgaggt
gtaggagaatgctcaggaaagaaggagtgctggacaggaagtggaggaaggatggagatg
gtgatgtcagggctcagtgccaatgaacagggcctggtgaagaaatttgcgaggaagatg
aaggctggtgttagcagtcaggtcacgcccactacaacacacatcatcattaaaacagat
ggagacctggtgtgtgagcgaacgttaaagtacttccagggcatcgcaggcaggaagtgg
atggtgagcttcctgtggatctcggagtgcttcaaacacagcaaacttctcactgaagct
ccgtacgaggtttgcggggacgtcgttaacggacgcgatcacaacggaccccggaaagcc
aggactgctcataacctgctgatgaaagggtgtgagatctgcttccaaggttccttcact
gatatgacctcagatcagatggaggtgatggtggagcagtgtggtgctacagtcatgaaa
gatcctctgatgttctccagaaaggatcaggatatctgttaccaggtggtggtggttcag
cctggtcctgatgactctcagtcttactacacagctctacagaagaaagccacagtggtg
actcggaactggctcctggactcgctctccacgtacacgctccaaaatccactccattat
aaaccataa
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integrated database retrieval system
