Silurus meridionalis (southern catfish): 124389083
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Entry
124389083 CDS
T08004
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124389083 (scn4aa)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
124389083 (scn4aa)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
ATP-synt_B
IQ
MAT1
Motif
Other DBs
NCBI-GeneID:
124389083
NCBI-ProteinID:
XP_046710268
LinkDB
All DBs
Position
7:5034669..5064473
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AA seq
1831 aa
AA seq
DB search
MVPVTGPEAFRRFTPESLAEIERLIEERKSGKEAEGMVPEAEPSAPSSDLEAGKSLPMIY
GDPPDDMLNTPLEDLDPFYKAQKTFIVITKGNTIYRFNAESSCYCISPFNLIRRAAIRIL
IHSLFSMLIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEAAIKVVSRGFCIGSFTF
LRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQSVK
KMVDVMILTNFALAVFALIGLQLFMGNLRHKCIRWPISNNTIDDDYAALISNTTFINSTF
DFKAYIENEENQYFLEGSLDALLCGNSSDAGKCPEGFTCMKAGRNPNYGYTSFDTFGWAF
LALFRLMTQDYWENLFQLTLRAAGKTYMLFFVVVIFLGSFYLINLILAVVAMAYEEQNQA
TIAEAREKEEEFQRLLEQLNNQEQQMRAESKASLASQTSHSRGSEMADDGDDVIKDCNGR
IIPRLVIHRAPTIVQSGPDDEQKADKKSLSSQHSMMRLGHPGLSQRTASALSVCSATREE
LEDAQRPCPPGWYKFADIFLKWDCCAPWIIFKKWVHFVVMDPFVDLGITICIVLNTLFMA
MEHYPMSPEFEHVLSVGNLVFTGIFTAEMVFKLIAMDPYYYFQVGWNIFDSIIVSLSLVE
LGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAV
VGMQLFGKSYKECVCKIAEDCVLPRWHMYDFFHSFLIVFRILCGEWIETMWDCMEVAGES
MCLVVFLMVMVIGNLVVLNLFLALLLSSFSGDNLSASDEDGEMNNLQIAIGRITRGIDWV
KSFVVGTIRQLLCRKPPEGDTGGTECEDTGKKESLSLNNLDEGKMVDGLSNCLEAMTLNV
PIAKAESDVEEGDSGDFSEEESVNKKKAKGILNDDDSSVCSTVDYVPPEPPAEQEEEEEP
EPDDPEACFTENCVRRFPCLNVDISQGRGKSWWNLRRTCYTIVEHDYFETFIIFMILLSS
GALAFEDIYIERRRVIKIILEYADKVFTYIFVIEMVLKWVAYGFKTYFTNAWCWLDFLIV
DVSLISFTANLMGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLL
VCLIFWLIFSIMGVNLFAGKFYRCINTTTDELFPIEQVNNKSDCLALMYTNESRWVNVKV
NYDNVGFGYLSLLQVATFKGWMDIMYAAVDSREVGEQPSYEINLYMYLYFVIFIIFGSFF
TLNLFIGVIIDNFNQQKQKFGGEDLFMTEEQKKYYNAMKKLGSKKPAKPIPRPANMIQGL
VFDFISQQFFDIFIMVLICLNMVTMMVETDDQSTEKENVLYLINLVFIIVFTGECVLKMF
ALRQYFFTVGWNVFDFIVVILSVAGLMLSDIIEKYFVSPTLFRVIRLARIGRVLRLIKGA
KGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKEAGVDDIFNFETFGNS
ILCLFEITTSAGWDGLLLPILNSGPPDCDPDIENPGTSVRGNCGNPGMGIMFFCSYIIMS
FLVVVNMYIAIILENFNVAQEESSDLLCEDDFEMFNETWERFDTEGTQFLDYNHVFDFVD
ALQAPLRIHKPNKLILINMDLPIVIGDKIHCLDIMLAVTQHVLGDTIEMAAMRESMEAKF
KMNNPGPKSFEPIITTLRRKEEERAAIVIQNSYRRHLLKRCIHHASFIQRSKKRKVRRQE
EEEPSEKEGLIARKMNALYGSNADLAMALELRSRPLPAKPFSSSFKVPGTHQWTQGRQRI
VPVEVVHDIVLRSAPTSLRKSSSVEAKESII
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggtccccgttacaggccccgaagcgtttcgtcgcttcactccggaatcactggccgag
atcgagaggctcattgaggagaggaaatccgggaaggaagcagagggcatggtgccagag
gctgagccatcggcacctagcagtgacttggaggcaggaaagtctttgcccatgatatac
ggagatccaccggacgacatgctcaacacccctttggaagacttagaccctttctacaaa
gcgcaaaaaacgtttattgtaatcaccaaaggcaacacgatctacaggtttaatgcagag
tcatcctgttactgcatcagcccatttaacctcataagaagagccgccatcagaattctc
atacattcgctatttagcatgcttatcatgattactattctctccaactgtgtattcatg
acgatgagcaaccctcctgcctggagtaaaaccgtggagtatgtctttactggtatatat
acctttgaggcagcaattaaagtggtgtcacgaggcttctgtattggatctttcacattc
cttcgtgatccatggaactggctggatttcatggtgattagcatggcgtacctcacagag
tttgttgatcttggcaatgtatcagcacttaggacgttccgtgtgctcagagctctgaaa
acaatcacagttattccaggcttaaaaactattgtcggagcccttatccagtcggtcaaa
aagatggtggatgtgatgattctgaccaactttgccttggctgtatttgccctcatcggc
ctgcaactcttcatggggaacctgcgccacaagtgtattcgctggcccatttcaaacaac
acgatagatgatgactatgccgctctgatctctaacaccaccttcatcaacagcactttt
gacttcaaagcctacattgaaaacgaagaaaaccagtactttctggaaggtagcttagat
gctttactatgtggcaacagttctgatgctggaaaatgcccagaagggttcacatgcatg
aaggctggaaggaacccgaattacggctacaccagctttgacacatttggctgggcattc
cttgctctcttcaggctgatgactcaggactactgggagaacctttttcagctgactctt
cgtgcagctgggaagacctacatgctttttttcgtggtggttatatttcttggatcgttc
tacctcatcaacctaatcctggcagtagttgcgatggcatacgaagaacagaaccaggcc
acgattgcagaggcccgggaaaaagaagaggaatttcagagactgctagagcagttgaat
aaccaagagcaacagatgcgggctgaaagcaaggcatcactggccagtcagacatctcat
agcagaggctcggaaatggccgatgatggcgacgatgtaataaaggactgtaatggtagg
atcattccccgtctggtcatccatagagctccaactatagttcagtcaggaccagacgat
gagcaaaaggctgacaaaaagtcattgtcctcccagcatagcatgatgcgccttggacac
cccgggctctctcagagaacagccagtgccttgagtgtgtgcagtgcaactagggaagag
ctggaggatgcccagaggccttgtcctccaggctggtataaatttgctgacatctttctg
aagtgggactgctgtgcaccctggattatcttcaagaaatgggtccattttgtggtgatg
gatccttttgtggacctgggcatcacaatttgcattgtgcttaatacacttttcatggct
atggagcactatccgatgagtcctgaatttgaacatgtgctcagtgtcggcaacttggtg
ttcactgggattttcacagctgaaatggtgttcaaactcattgccatggatccatattac
tacttccaggtgggctggaacatatttgacagcatcattgtcagtcttagcctggtggag
ttgggcctggccaatgtgcagggtctgtctgtccttaggtccttccgtttgctgcgagtc
ttcaagctggctaaatcctggcccaccctcaacatgctgatcaaaatcattggtaactct
gtgggtgctctggggaacctaactctggtgctggccatcattgtcttcatcttcgccgtt
gtaggcatgcagctcttcggcaagagctacaaggagtgcgtgtgtaagatcgctgaggac
tgtgtgctgcctcgctggcacatgtacgactttttccattcgttcctcattgtctttcgc
atcctgtgtggggagtggatcgaaaccatgtgggactgcatggaggtagccggagaaagc
atgtgccttgtggtgtttctcatggtcatggtcataggaaacctggtggtgttgaacctg
ttccttgccttgctgctcagctccttcagcggtgacaacctttcagcgagcgatgaagac
ggcgagatgaacaatctccagattgccatcggacgcatcaccagaggcattgactgggtc
aaatcctttgttgttggtactataaggcagttgctgtgcaggaagcctcccgagggcgac
acgggagggacggaatgcgaagatacgggcaaaaaagaaagcctttcgttgaacaacctc
gacgaaggaaagatggtggatgggctttccaactgtctggaagctatgaccttgaacgta
ccaattgccaaagctgaatctgatgttgaagaaggggattcaggagatttctcagaagaa
gaaagtgtgaacaaaaagaaggctaagggtattctcaatgatgacgactcttcagtgtgt
agcacagtggactatgtacctccagaacccccagctgagcaagaggaggaagaggaacct
gagcctgatgatccagaagcctgttttactgaaaattgcgtgaggcgatttccatgtcta
aacgtagacatcagccagggaaggggaaagagttggtggaatctgcgcaggacttgctac
actattgtggagcatgattactttgaaacattcatcatctttatgattcttctcagtagt
ggtgccctggcatttgaggacatatacattgagcgccgccgggtaataaaaatcatcttg
gagtatgcagacaaagtcttcacgtacattttcgtaatagagatggtcctgaaatgggtc
gcatatggcttcaagacttacttcaccaatgcctggtgttggctggacttcttaatcgtt
gatgtgtcactgatcagtttcacggcaaatctaatgggctattccgagctgggaccgatc
aaatctctccgcactcttagggcacttcgacctttacgtgccctgtccagatttgaagga
atgagggttgttgtgaatgcgttggtgggtgccattccttccatcatgaacgtgcttctg
gtctgtctgatattctggctgatcttcagtattatgggtgtcaacctgtttgctggcaaa
ttttatcgctgcattaacaccaccacagatgagcttttccccatagagcaagtgaacaac
aagagtgactgcctagcattaatgtataccaacgaatcgcgctgggtcaacgtcaaggtc
aactatgacaacgtgggcttcggttacctttctctgctacaagtggctacatttaaaggc
tggatggacattatgtatgctgcagtagattccagagaggtgggagaacagccatcgtac
gagatcaacttgtacatgtatctatattttgtcatcttcatcatcttcggctccttcttc
accctcaacctcttcattggcgtcatcattgacaacttcaatcagcaaaagcaaaagttt
ggtggggaagatctctttatgactgaggagcagaaaaagtactacaatgcgatgaagaaa
ctgggttccaagaagcctgccaaacccatacctcgccctgcgaatatgatccagggcctg
gtgtttgacttcatctctcagcagttcttcgacatcttcatcatggtactcatttgcctt
aacatggttaccatgatggttgagacagatgaccaaagcactgagaaagaaaatgttctc
tacctgatcaacctcgttttcattattgtcttcactggggagtgcgttctcaaaatgttc
gctctgagacagtacttcttcacagtgggatggaacgtttttgatttcattgttgtcatc
ctttcggttgctggactgatgctgtcagacataatcgaaaagtactttgtgtctcccacc
ctgttccgtgtgattcgcttggctagaattggccgggtgctgcgtcttatcaaaggggca
aagggcatcaggacgcttttattcgctttaatgatgtcacttcctgccctgttcaacatt
ggcctgcttctcttccttatcatgttcatcttctccatctttggcatgtctaactttgcc
tacgtgaaaaaggaagctggtgtggatgacatttttaactttgagacatttgggaatagc
atcctttgcctatttgagatcacgacttcagcaggttgggatgggctactgctgcccatt
ttaaacagcggccctcctgactgtgaccctgacattgaaaacccgggaacaagtgtgagg
ggcaactgtggcaacccaggcatgggcataatgttcttctgcagttacattatcatgtct
tttttagtggtggtgaacatgtatattgccatcatcttagagaacttcaatgttgcccag
gaggagagcagtgacctgttatgtgaggatgacttcgagatgtttaatgagacttgggag
aggtttgacacggaaggcacccaatttttggactacaaccacgtttttgacttcgttgat
gcactgcaagcacctttgcgtatccataaacctaacaaactcatcctgatcaacatggac
ctgccgatcgtaataggagacaaaatccactgtctggatatcatgctggccgtcacccaa
catgtgctcggagacactatcgaaatggcagccatgagggagagcatggaggcaaaattc
aagatgaacaacccaggtcctaaatcctttgaacccatcatcaccaccctgagaagaaag
gaggaggagcgggcagccattgtgattcaaaattcatatcgcagacatctcctgaaacgc
tgtatccaccatgcctcattcatacaacgctccaagaaaagaaaagtgaggcgacaggag
gaggaggaaccttcagagaaagaagggctaatagctcgcaagatgaatgctctctatggt
agcaacgcagacctggcaatggctctggagcttaggtctaggcctttgccagcaaaacct
ttttcctccagttttaaagttccaggaacccaccaatggacccaaggtcgacagagaatc
gtgccggtagaagtcgtacatgatatagttctccgttctgcacccacatctctgcggaaa
tcttcgagtgtagaagccaaagaatcaataatataa
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