Silurus meridionalis (southern catfish): 124389779
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Entry
124389779 CDS
T08004
Symbol
pkp1b
Name
(RefSeq) plakophilin-1
KO
K10387
plakophilin 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124389779 (pkp1b)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
124389779 (pkp1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Arm
Atx10homo_assoc
ELMO_ARM
ARMC9_ARM
Arm_2
Motif
Other DBs
NCBI-GeneID:
124389779
NCBI-ProteinID:
XP_046711224
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All DBs
Position
1:13672683..13689185
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AA seq
720 aa
AA seq
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MTRDPLKSAMSFGEIGETSLALPSDGDSRSGQQRVMEQVSTMRKSRKKSNYNNRGSAGTL
SPTSPKSDSVFFESKFPHSSLNGLDYAYEGTMANGHTKTRKQQQGMTQRSSSTRSAYYHR
ILNNNILPNNIHALSQPSIPADFYATQGGIKSNTAHWSQKYVQAKTLERSHSQPPQTSPV
QTKANNILQATNSQFFISNTINKRPPSAHSSSEPKLSAANRSKSETNGMNGEANLSDITL
SDAISWTIHGDEKYQLHGASVIQHNTYTDDKAKEEVRKLGGIVSLVSLLSSSNPQIQLSS
VSALRNLVFKNTANKEEVRRAGGLTEALQLLRNTNSAEIQKHVTGLLWNMSSEESIQPDL
LRHALPVLTETVLQPNADASNFSSDVDARTESFCNATACLRNLSSGRLANRQSLRNCEGL
IDSLVTHLQACVDNGQLDDKSVENCVCVLHNLTYQLEGEVPAVFSKINKKATASESRANT
ADIGPIGCFSNQSRKVQEESNSEFRLMDDFDPKGKSRLVHTKTLQLYLNLLSSSHNVRTQ
EACCGAMHNLTAKKGPVSDLLSYTIVQRLNGLPSLIPYLQSQNLPLRDNITTLICNLSRT
PQLQKIIAHQALPSLIKNLPSDPTPESDSSLAMICHTTNNLLRVDPELGKKSINNKLIDS
LINLSQNKELPKASTAAGALLQSLWSDKTIQGVLKKQGMAKKAFVNEVTSAAVRSLQIID
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgacacgggaccccttaaagtcggctatgtctttcggggagatcggggagacgtcgctg
gcgctgccgtccgacggagattcccgctcggggcagcagcgcgtcatggagcaggtcagc
accatgaggaagagcaggaagaagagcaattacaacaacaggggatctgcgggaaccctg
tctcccaccagccccaagagtgacagtgtgttttttgaaagcaagttcccccactcaagt
ttaaatggattggactatgcgtatgaaggcaccatggcaaatggacacacaaaaacgagg
aaacagcagcagggcatgacgcaaaggagcagcagcacaaggtcagcgtactatcatagg
atcctaaataacaacattttaccaaacaatattcatgctctaagccaacccagtatcccg
gcagacttttatgccacacaagggggcataaagagtaacaccgcccactggagtcagaaa
tacgtgcaggcaaaaacccttgagaggagtcacagccaacctccacagaccagccctgta
caaacgaaagcgaacaacatcttgcaggccaccaacagtcaattttttatcagcaacacc
atcaataagcgaccaccttctgcccactcaagctctgagcccaagctctcagcggctaac
aggagcaagagtgagacgaacggaatgaacggagaggcaaacttgtccgatatcacatta
tcagatgcaatatcctggaccatccatggcgatgaaaagtatcagctgcatggagcttct
gttattcagcataacacatacacagatgacaaagccaaagaagaggtacgtaagcttggt
ggtattgtttccttggtgtccttgctcagcagctcaaaccctcagatccagctgtcgtcg
gtctccgccttgcgaaaccttgtcttcaagaatacagccaacaaggaggaggtgcggcgc
gcaggagggttgaccgaggctttgcagctactccgaaacactaactcagctgaaattcag
aaacatgtgaccggtcttttgtggaacatgtcttctgaagaaagcattcagccagatctg
ctacgtcatgctctccctgtcctcactgagactgtgctgcagcccaatgcagacgcctca
aacttttcttctgatgttgatgctcgtactgaaagcttttgcaacgctacagcatgtcta
cgaaatctgagctctggcagactagcaaaccggcaatccttgcgcaactgtgagggcctg
attgactccctagtcacacacctgcaggcttgtgtggacaatggccagctggatgataag
tcagtggagaactgtgtgtgtgttctgcacaacctcacctatcagctggaaggtgaggtg
cctgctgtgttcagcaagataaacaaaaaggctacggcgtctgagagccgcgccaacacc
gccgacatcggccccatcggctgctttagcaaccagagtcgcaaggtccaggaagagagc
aactccgaattcagactgatggacgatttcgatcccaaaggcaagagccggcttgtacac
acaaaaacattgcagttgtatctgaatcttctgagttcgagtcataacgtacgcactcaa
gaggcatgctgcggagcgatgcacaacctcaccgccaagaagggccccgtgtcagatcta
ttgagttacaccatcgttcagagactgaatggtctgccgagccttattccatatctacag
tcgcagaatttgcccctgagagacaacatcactacactgatatgcaacctgtctcgaact
ccacagctgcaaaagattatcgctcatcaggctctccccagtctcatcaagaacttgccg
tccgaccctactccagagtctgatagttccttagcaatgatctgccacacaacaaacaac
ctgctgagagtagatcctgagttggggaagaaatcaattaacaataaactgatcgattcg
ctcattaacctgagccagaacaaggaacttcctaaggccagtacggcagcaggagctctc
cttcaaagcctctggtctgacaagactattcaaggtgtcctcaagaagcaagggatggct
aagaaggcattcgtgaatgaggtaacttcagctgcagtcagatctttacagattattgac
taa
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