Silurus meridionalis (southern catfish): 124390093
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Entry
124390093 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: otoferlin
KO
K19949
otoferlin
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124390093
Membrane trafficking [BR:
smeo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124390093
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
B3R
Motif
Other DBs
NCBI-GeneID:
124390093
NCBI-ProteinID:
XP_046711755
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All DBs
Position
8:complement(18280164..18293473)
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AA seq
1789 aa
AA seq
DB search
MKRAKSRGLKDDGKDEPAILETEDLDRRFGRAPDPDTISLASVTAVTTNVSNKRSKPDIK
IEPSAGRLMDFQVSITVIEARQLVGLNMDPVVCVEIGDEKKYTSMKESTNCPYYNEYFVF
EFHVPPDVMFDKILRVSVIHSKNLLRSGTMVGAFKMDVGTVYSQPDHQFYHKWAILCDPD
DITAGCKGYVKCDIAVVTKGDNIKTPHKSNETDEDDIEGNLLLPEGVPADRQWARFYVKI
YRAEGLPKMNTSIMANVKKAFIGENKDLLDPYVQVHFAGQKGKTSVQKSCYEPIWNEQII
FTEQFPPLCKRMKLQIRDADKVNDVALGTHFIDLXKVSNDGDKGFLPTLGPAWVNMYGST
RSYTLMDEYQDLNEGVGEGVSFRAHLLISLAVEILDTSSPEIISSPEVQVEGVPNISENA
TGKIEEFFLFGAFLEATMIDRKIGDKPINFEVTIGNYGSDVDIPTKPRTKKSKKGDGDEE
SGLIQGSSDEEVDHDGGLESVSTTPPMKPVITDRNYFHLPYFERKPCIYIKSWWQDQRRR
LYNANIIENIADKLEEGLNDVQEIIKTEKAFPERRLRGVLEELSNGCSNFLTLANKDQTQ
SGITKLDRERLKVCMWELETMGQQAKTMRTQVKKKNVKDKVKLTQNFLQKLRFLSDEPQH
SVPDVYIWMVSNGKRIAYARVPSKDILFSTVEEEIGKDCSKVKTVFFKLPGKKSFGPAGW
TVQAKTEIYLWLGLSKQRKDFLNGLPNGFEENKAIKGAGMQSSPPISLIYTMKQVFQLRV
HMYQARSLFAADSTGLSDPFARVFFSTHSQVTEIVNETLCPTWDQLLVFDNVELYGEACE
LRDDPPIIVIEIYDQDSMGKADFMGRTFAKPITKMSDEHYGPPRFPPQLEYYQVYRGNCT
AGEMLAAFELLQIGPGGKADLPPIDGPTDMDRGPILPVPIGIRPVLSKYRIEVLFWGLRD
LKRVNLSQVDRPRVDIECAGKGIQSALIPNFNKNPNFSTLVKWFEVDLPENELLHPPLNI
RVVDCRAFGRYTLVGSHAVTTLRKFIYRSPDKSVNNWSAMEEIVIHTEPEPAVKKMETMV
KLDSGSDAVVKVDMPDDDKDGKGKKKRKKGEEIEEEPLDESMLDWWSKYFVSIETLMEIL
KAQEAEKAETEEREEMDADGADIKSDSNVKGNKKKKGKAKDKNKAAPGEGVTDRKKPKIE
ELKVYNRELENEFDYFEDWLHTFNLYRGKSGDDDENAMDEDRLVGKFKGSLCMYKVSDEL
YREMGIDPNIGTFQNIPHNDPVNVLVRVYVIRATDLHPADINGKADPYIAIKLGKSEIKD
KENYISKQLNPVFGKSFDIEATFPMDSTLTVSIYDWDLVGTDDLIGETKLDLENRYYSKH
RATCGISTSYAIHGYNVWRDPLKPTHILAKLCKDGKLDAPQYGPGGRVKVANRVYTGPTE
IEDENGLKKQTDEHLALAVLNHWEDIPRVGCKLIPEHVETRPLLNPDKPGIEQGRIEMWV
DMFPKDQPAPGPAIDISPRKPKKFELRVIVWNTDEVVLEDDDIFTGEKSSDIFVRGWLKG
QQEDKQDTDVHYHSLTGEGNFNWRFIYPFDYLMAEEKIVISKKESMFSWDETEYKIPARL
NLQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTLDMVLNEQDMPMVNIFKQKRIKG
WWPFIARDENDEMEITGKVEAELHLLTGEEAEKSPVGEGRNEPEPLEKPNRPDTTFLWFI
SPLKAIRYLVCNNYKWLIIKIVVALLLLAMLGLFIYSMPGYMVKKLLGA
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtgcaaagtcccgtggcttaaaggatgatgggaaagatgagccagccatcctg
gagacagaggacttggaccgaaggtttggcagagcaccagaccctgacacaatttcactg
gcctctgttacggctgtgacaactaatgtttctaacaaaagatcaaagcctgacatcaaa
attgaacccagtgctggaagactgatggatttccaagtcagtattacagttattgaggca
cgacaactagtgggcttgaacatggacccagtggtctgtgttgaaattggtgatgagaag
aagtacacttcaatgaaggagtcaaccaattgtccttactacaatgagtattttgtcttc
gagttccatgttcctcctgatgtcatgtttgacaagatcctgagggtgtctgtaatccac
tcaaagaatcttcttcgaagtggaacaatggttggtgccttcaagatggatgtgggaaca
gtttattcacagcctgaccaccagttctatcacaaatgggccatattatgtgatcctgat
gacatcactgcaggatgtaaaggctatgtaaaatgtgacattgctgtggttacaaaaggt
gacaacatcaaaactccacacaagtccaatgaaaccgacgaggatgacattgaggggaac
cttttgttgccagaaggtgttccagctgaccgtcaatgggccagattctatgttaaaatc
taccgagctgaaggcttgcctaagatgaataccagcattatggccaacgttaaaaaggca
tttattggtgagaataaagacctgctggacccatacgttcaggtgcactttgctggtcag
aagggaaaaacctctgtccagaaaagttgctatgaaccaatctggaatgagcagataatt
ttcactgaacaatttccaccactgtgtaaacgtatgaagcttcaaatccgtgatgcagac
aaagtgaatgatgtggctcttggaacccatttcattgacctancgaaggtctcaaatgat
ggagataaaggctttctcccaactttggggccggcctgggtgaacatgtatggttcaaca
cgaagctacaccctcatggatgagtatcaggacctgaatgaaggagtgggagagggtgtt
tcatttcgggcccatctgctgatcagcctggctgtggagattctggacacctcctctcca
gagataataagctctcctgaggttcaagtggaaggcgtgcccaacatttctgagaatgcc
actggaaaaatcgaggaatttttcttgtttggagcatttctagaagcaacgatgattgac
agaaagattggtgacaaacccatcaactttgaagttacaatagggaattatggaagtgat
gttgatatccctaccaaaccaagaacaaagaagtcgaagaaaggagatggtgatgaagaa
tctggactcatccaaggttccagtgatgaagaggtggaccatgatggaggactggaatca
gtgtcgaccactccaccaatgaaaccagtcatcactgacaggaactactttcaccttcca
tattttgagagaaagccttgtatttatattaagagctggtggcaagaccagcgaagaaga
ctatacaatgccaacataatagaaaacattgcagataagctggaagaaggactgaatgat
gttcaggagattattaaaacggagaaagcttttcctgagcgtagactcagaggagttcta
gaagaactaagcaatggctgcagcaactttctaacactggcaaataaggaccaaactcag
tcaggcatcacaaagttggatcgagaaaggctgaaagtatgcatgtgggagctggaaact
atgggccaacaagcaaagacgatgcgaacacaggtgaaaaagaaaaatgtcaaggacaaa
gtgaaattgacacaaaacttccttcagaaactgagatttttgtctgatgagcctcaacac
agtgttccagatgtttacatatggatggttagcaatggaaaacgcattgcatatgctaga
gtgccctccaaagacattcttttctctactgttgaggaggagattgggaaagactgttca
aaagtcaagactgttttcttcaagctcccaggtaaaaagagttttggaccagcaggctgg
actgtgcaagccaaaactgaaatatacctgtggctgggtttaagcaagcagcgcaaagat
ttcctgaatgggctaccaaatggatttgaggagaacaaggccatcaaaggagcaggaatg
cagtcatcaccaccaatcagcttgatctacacgatgaagcaagtctttcagctgagagta
cacatgtaccaggcaagaagcctgtttgctgcagacagcacaggtctttcagaccccttt
gccagagtttttttttccacacacagccaagtcacagagattgtgaatgaaactctctgc
cccacgtgggaccaacttctagtatttgacaatgttgaattatatggtgaggcttgtgag
ttgagggatgaccctccgattattgtcattgagatctacgatcaagacagtatgggaaaa
gctgattttatgggaaggacatttgcaaagccaataactaagatgtcagatgagcattat
gggccaccacggtttccgcctcagctagagtactaccaagtgtaccgtggaaactgcact
gctggtgaaatgcttgcagcttttgaattactgcagatcggaccgggtggaaaggctgac
cttcctcccatagatggaccgacagatatggaccgtggtccaattctgcctgttcccatc
ggcattaggccagtcctgagcaaataccgcattgaggttttattctggggcctgagggac
ctaaagcgagtgaacctttcccaagttgatagaccacgtgtggatatagaatgtgctgga
aagggaatacagtcagctctcattcctaacttcaacaaaaatcccaattttagcacactg
gtcaaatggtttgaagtggacctgccagaaaatgagcttctgcatcctcctctgaatatt
cgagtagtggactgcagagcttttggccgttatacactggttggctcccatgcagttaca
acactgcgaaaattcatctacagatcgccggacaagagtgtcaacaattggtctgcaatg
gaagaaattgtgatccatactgaacctgaacctgctgtaaaaaagatggagacaatggtc
aaacttgattcaggttccgatgcggttgttaaggttgatatgcctgatgatgacaaggat
ggaaaaggaaagaagaagaggaagaaaggggaagaaattgaggaagaaccactagatgag
agcatgctggattggtggtccaaatactttgtatcaatcgaaacacttatggagatccta
aaagcacaagaggctgaaaaggcagagacagaggaaagagaagaaatggatgcagatgga
gcagatattaaatctgactctaatgtgaaaggaaacaagaaaaaaaaagggaaagcaaag
gataagaataaagctgctccaggggaaggtgtaactgacaggaaaaagcctaaaattgaa
gaactgaaggtatacaacagagagctagagaatgaatttgattactttgaagattggctc
cacacctttaatctttatcgaggaaagagtggtgatgatgacgaaaatgcaatggatgag
gacagacttgttggcaaatttaaaggatccttgtgtatgtacaaagtgtcagatgagctg
tatagagaaatgggtattgatcccaacataggcactttccagaacattccacacaatgat
ccagtcaatgttttagttcgagtctatgtcataagggctacagatctgcaccctgcagat
ataaatgggaaagcagatccatacattgcaattaagctgggaaaatcggagatcaaagac
aaagaaaactacatctctaaacaacttaatcctgtctttggaaaatcatttgacattgag
gctacattccctatggactccaccctcactgtgtccatctatgactgggatttggtcggc
actgatgacttgattggggagacaaaacttgatttggagaatcgctattacagcaaacac
agggccacatgtggtattagtacaagctatgcaatccatggttacaatgtttggagagat
ccactgaagccaacacacatcctagctaaactttgcaaggatggcaaattagatgcaccc
cagtatggccctggaggaagagtgaaggtggcaaacagagtttatacaggcccaactgaa
attgaagatgaaaatgggctcaaaaaacagacagatgagcaccttgctctagcagttctt
aatcactgggaggacataccacgagtgggctgcaaacttatcccagagcatgtagaaacc
agacctctacttaaccctgataaacctgggattgagcaggggagaattgaaatgtgggtg
gatatgttcccaaaagaccagcctgcacctggacctgctatcgatatttcaccacgcaaa
ccaaagaagtttgaactcagggtaatcgtttggaatacagatgaggttgtcctggaagat
gatgacatattcacaggagaaaagtccagtgatatttttgttagaggatggcttaaaggt
caacaagaagataagcaagacacagatgtccattaccactccctaacaggggaagggaac
ttcaactggcgcttcatttacccctttgactatttaatggctgaagagaaaattgtcata
tcaaagaaggaatccatgttctcctgggacgagaccgaatacaagatccctgcccgtctg
aatctgcaagtttgggatgcagatcatttctctgctgatgacttcctgggtgcaattgaa
ctagacctgaacagatttcctcgtggtgcaaaaactgcaaaacagtgcaccctcgacatg
gttcttaacgaacaagacatgccaatggtcaacattttcaagcagaaaagaatcaagggc
tggtggccatttatagccagagatgaaaatgatgagatggaaattacggggaaagtagag
gcagagcttcaccttttgacaggtgaagaagcagaaaaaagtcctgttggagaaggaagg
aatgagccagagcctctagagaagcccaatcgccctgacacaacgttcctgtggttcatc
agtccactcaaagcaatccgatatctggtctgcaacaactacaagtggctgatcatcaaa
atagtggttgctttgctgttgttagcaatgctgggcttattcatttacagcatgcctggc
tatatggtgaaaaagctactgggtgcttaa
DBGET
integrated database retrieval system
