Silurus meridionalis (southern catfish): 124390278
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Entry
124390278 CDS
T08004
Symbol
traf3
Name
(RefSeq) LOW QUALITY PROTEIN: TNF receptor-associated factor 3
KO
K03174
TNF receptor-associated factor 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04620
Toll-like receptor signaling pathway
smeo04621
NOD-like receptor signaling pathway
smeo04622
RIG-I-like receptor signaling pathway
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124390278 (traf3)
04621 NOD-like receptor signaling pathway
124390278 (traf3)
04622 RIG-I-like receptor signaling pathway
124390278 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124390278 (traf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
Rod_CreS
zf-C3HC4
zf-C3HC4_2
CCDC39
Sina_ZnF
ATG16
zf-C3HC4_4
DUF1664
zf-RING_UBOX
PMD1-like
FapA
AAA_13
zf-Di19
CCDC18_1st
Filo_VP35
YonD_C
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
124390278
NCBI-ProteinID:
XP_046712064
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All DBs
Position
8:complement(7963663..7976158)
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AA seq
556 aa
AA seq
DB search
MSLPRRVDGREQPIALHQQQSLLPLRGGFQDNFIMPPEPKYCCEHCRMVLCNPRQTECGH
RFCESCITQLLGKPNPVCPADMEPLSQDKIFRDVCCHKEIMTLKVFCRSAKNGCKEQMSL
QQVTDHLNMCEYFEVPCPLCKEKIMRKDMPEHLSRKCKYREATCEFCKHKIALTELQKHK
ETVCPAIPVACPNHCSAPSILRSELSMHQQDCPKAQVTCSFFRFGCTYKGLNQELREHES
SFASEHLRLMVARSNTLEAKVEDVKNELLERYKVLPGLNSRITEVEEQYKEMRENXRQVE
QKLSTMQKLMSTHSEKLLEVEMELRELRPLRAMREEVEALRGAVESMRSMVASLDSVRTG
SGTHTMTSLETELSRHDELLSVHDIRLADMDLKLQVLETASFNGTLIWKICDYKRRKQEA
VASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFRQ
KVTLMLMDQGPTHKHLADAFKPDPNSSSFRRPTGEMNIASGCPLFITQTVLENGSYIKDD
TIFIKVTVDTSDLPDP
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgccgcgccgtgtggacgggcgggagcagccgattgctctgcatcagcagcag
tccttactcccgcttcgtggtggttttcaggacaacttcatcatgcctcctgagcctaag
tactgctgcgagcactgtcgcatggtgctgtgtaatcctcggcagaccgagtgcggacac
cgcttctgcgagagctgcattacccagctgcttggtaaaccaaatccagtgtgcccagct
gatatggagccattatctcaagataaaatattccgcgatgtttgctgtcataaagagatt
atgacattgaaagtcttctgccgcagtgcaaaaaacggatgtaaagaacaaatgagttta
caacaggttacggaccatttgaacatgtgtgagtactttgaggttccctgtccgttgtgt
aaagagaagatcatgaggaaggacatgcctgaacacttgagccgcaaatgcaaataccgt
gaggccacctgtgaattctgcaaacacaaaatagccttaacagagctacagaaacacaaa
gaaaccgtatgtcctgcaattccagtagcatgccctaatcattgttcagctccatccatt
ttaagaagtgagctgtccatgcaccagcaagattgtccgaaggctcaagtcacttgttcc
ttctttcgttttggctgcacctacaagggtctaaaccaggaattgagggagcatgagtca
agctttgcgtcagaacacttgcgactaatggtggctagaagcaacaccctggaggccaag
gtggaagatgttaagaacgagctgctggaacgctacaaggttctcccaggtctgaacagt
cgtattacagaagtggaagaacagtataaagagatgagagaaaatnaccggcaggtggag
caaaaactctccactatgcagaagctaatgagtacacactccgagaagctgctggaagtg
gagatggagctaagggaactgcggccattaagggccatgcgtgaggaagtggaagctctc
aggggggccgtggagagcatgcgctctatggtagcatcacttgactctgtccgcaccggt
tcgggtacccacacgatgacctcattagagacggagctgtcacggcatgacgagctgctg
agtgtgcatgacattcgcttggccgacatggaccttaagctgcaggtgctggagacagcc
agctttaacggaactcttatttggaagatttgtgactacaaacggcgcaaacaagaggcg
gtggcttctaaaacactgtcgctttacagccagcccttctacactggctattttggctac
aagatgtgtgcgcgtgtttatttgaacggtgatggtatgggaaagggcacacacctgtca
ctcttcttcgtagtgatgcgtggtgagtacgatgcactgctgccatggcctttccgccaa
aaggtgacactcatgctaatggaccaaggtcctacacacaagcacctggctgatgccttc
aagcctgacccaaacagcagcagcttccggcggcccacaggggaaatgaatattgcctca
gggtgtccactctttattacccaaactgtgctggaaaacggcagctacatcaaagatgac
accatcttcatcaaggtcacagtggacacctcagacctgcctgacccatga
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