Silurus meridionalis (southern catfish): 124392742
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Entry
124392742 CDS
T08004
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04115
p53 signaling pathway
smeo04210
Apoptosis
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
124392742 (apaf1)
04115 p53 signaling pathway
124392742 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124392742 (apaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
APAF1_C
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WHD_APAF1
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
ANAPC4_WD40
NB-ARC
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
CARD
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_WDR19_1st
RMC1_N
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
PEP5_VPS11_N
Beta-prop_NUP159_NUP214
eIF2A
Beta-prop_ACSF4
Beta-prop_Vps41
WD40_like
Beta-prop_Nup120_160
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_RSE1_2nd
AAA_16
WDR54
VPS11_N
Beta-prop_WDR11_2nd
CARD_2
DUF7099
Nucleoporin_N
WHD_Dark
Sld5
Motif
Other DBs
NCBI-GeneID:
124392742
NCBI-ProteinID:
XP_046715891
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Position
10:complement(3018123..3061042)
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AA seq
1259 aa
AA seq
DB search
MEERARSCLLRSRMTLEEDIKASYLIDHMITDGVLTGDEEDRILSKPTRKEKAAALLEVL
LCKDNRAYISFYNALIRESYGDLAGLLHGDLPQLSPEGDKSSLNGISSSVQMILSEGGVP
QRPMVFVNRPSLLSQLREKLRHLQKAPGWVTVHGMAGSGKSVIAAEAVRDRVLINECFPD
GVHWLSIGQCDKADLLVRMQSLCFRLEQSQSSESSLRTPGSVEEAKERLRFLILRRLPRS
LLILDDVWDSFTLRAFDIQCRVLLTTRISTLTDAVSGHRFKVSVESGLDEEKALEILALY
VNGNAQTLPEQARCIVEECKGSPLVVSLIGALLRDFPDRWGYYLEQLRKKRLKRIRKSSS
YDYEALDQAMDASLQVLEEEHRELYKDLSVLEKDVKVPAKVLSVVWGLELEEVEDVLQEF
VNKSLMFRDCNQRPYLYFLHDLQLDFLTEQNRNQLAELHAKVVCQYQKAYQKMPPLSGDV
EGLYWYRFLAHHMARAGMSKELSSLMFSLDWVKNKAQVMGSAHLINDYAEYGGILDKENN
EVRQQFQEFLSLNGHQLEQRPFPDVVQLALAQPHSSEVYRQALMQARERASRGQLYLDWV
NKSSLESMSRLVLHPNQNSVHFACFSRDGSKIASCGASKTLRVFKSTSGEKIQEIQDLDD
EVLCCAFSPDDRQIATCSSDRKVKIWNLEKGTLVRVFNVEHDEQINHCQFTNMKRRILLA
TCSNDKITNTKVWNMNKQTSQNTMFGHMDGVNHCCFSPDDAYLATSSNDGTLKLFEVTSA
NEWKSIDITSLFPESDEGSVCVKCSTWSADGQRIIGAAKNTVFVFDVATLDLVLEIRASR
LSTVQYCHACPNSQLIALALSHYTVELWDFEANKKMAECSGHLSWVSCVQFSPDGSLLLS
ASDDHMIRLWKTERVHTSSAVALKRDFDVLFSQEDITVVAADSQNCLQVCSGPEGKVLLE
TARQEQRIRCVCICKQTSTVALGMEDGSVRVLEVPSGNVLATLQGHTKTVHHCLFTDDGQ
TLITASEDSTIRVWQWRTGEYLELKGHKEQVRRFQLLNSSSALLSWSFDGTVKVWDLKSG
EKLQDLQCHQGAVLSGDVSPDGLLFSTTSADKTVKVWSCSSWKMVFFLEGHKACVRSCRF
SGDNKRLATGDDNGEIRLWNMLNGKLLKICSRESKDSMDSFHGGWVTDLHFSPDSKVLVS
TGGYIKWWSVDKGEALQTFYTTGNNLKRICVSPDFKTFITIDNIGILYVLKQVKRRWTV
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagggctcgcagctgcttgctgcgctccaggatgaccctggaggaggatatt
aaggcttcctaccttatagaccacatgatcactgatggagttctgaccggagatgaggag
gataggatactcagtaagccaaccagaaaggagaaggcagcagccctgctggaggtcctg
ctgtgcaaagacaacagggcgtacatctcgttctacaacgcgctgatccgtgagagctac
ggagacctggccgggctgcttcacggcgacctgccgcagctcagccccgagggggacaag
agctccctgaacgggatctcttcctcagtgcaaatgatcctgagtgaagggggcgtgccc
cagaggcccatggtgtttgtgaaccggccttctctgctgtcccagctccgggagaagctg
aggcatctgcagaaagctccggggtgggtcaccgtgcacggcatggcaggatctggaaag
tctgtgatcgctgctgaggcggtgagagatcgggtgctgatcaacgagtgttttcccgat
ggagttcactggctgtccatcggtcagtgcgacaaagccgatctcctggtgagaatgcag
tctctgtgctttaggctggagcagagtcaaagttctgaatcgtctctaaggacgccaggc
tcggtcgaggaggcgaaagagcgactgcgcttcctcattctgcgaaggcttcccaggtct
ctgctgatcctggacgatgtttgggacagtttcactctcagggcgtttgatatccagtgc
cgagttctcctgaccaccaggatctccactctgaccgatgcagtgagcggtcacaggttc
aaggtttccgtggagagcggtctggacgaggagaaagctctggaaattcttgctctgtat
gtaaatgggaacgctcagactcttccagagcaggctcgctgcatcgtggaggaatgcaaa
ggttctcctctggtcgtatctctgattggggcgctgctccgagactttcctgatcgctgg
ggctactacctggagcagctgaggaagaagaggctcaagcgcatacgcaagtcctcctca
tatgactacgaggccctggatcaggccatggacgcgagtctacaggtcctcgaagaagag
cacagagagctctacaaagacctgagcgtgctggagaaggacgtgaaggtgcctgccaag
gtgctttctgtggtatggggtctcgagctggaggaagtggaagatgtcctccaggagttc
gtgaataaatctttgatgttccgtgattgtaaccagcggccgtacctctacttcctgcac
gacctgcagctcgactttctcacggagcaaaaccgcaatcagctagcggagctgcatgct
aaagtggtgtgtcagtaccagaaagcgtaccaaaaaatgccaccgctttcaggagacgta
gaggggttatactggtaccgcttcctggcccatcacatggcacgggcaggcatgtccaag
gagctctcttccctcatgttttcacttgactgggtaaagaataaggctcaggtgatggga
tccgcccacttaatcaacgattacgcagagtatggtggtattctcgacaaagagaataac
gaggtgaggcagcagttccaggagttcctgtctttaaacggccatcagctggagcagagg
ccgtttcctgacgtggtgcagctggccctggctcagccacactcctccgaggtctacagg
caggccttaatgcaggctcgggagagggccagcagggggcagctctacctggactgggta
aacaagagcagtctggagtcaatgtcacggcttgtactgcatccgaaccagaactcggtg
cacttcgcgtgtttctctcgggatggcagtaagatcgcctcgtgtggagccagcaagaca
ctgcgggtgtttaagagcacctccggagagaagatccaggagatccaggatcttgatgac
gaagttctgtgctgtgccttctctcctgatgaccgtcagatagcaacctgctccagcgac
aggaaagtcaagatatggaatttggagaaaggcacgctggtgcgcgtgtttaacgttgag
cacgacgagcagattaatcactgccagttcacgaacatgaagcggcgcatcctgctggcc
acctgctccaacgacaagattaccaacaccaaggtgtggaacatgaataagcagacgtct
cagaacaccatgtttggacacatggatggtgttaatcactgctgcttctctccggacgac
gcctacctcgccacctcgtccaacgatggaacgctaaagctctttgaagtgacctcagcg
aacgagtggaagtccatcgacatcaccagtctgtttccagagagtgacgaaggcagcgtt
tgtgtgaagtgcagcacgtggtcagctgatggccagcgcattataggtgctgcaaagaac
acagtgtttgtgttcgacgtggcgacactcgacctggtgttggagatcagagcgagtcgt
ctgagcacggtacagtactgccacgcctgtcctaacagccagctcatcgccttagcactg
tctcactacaccgtggagctgtgggactttgaggctaataagaagatggctgaatgcagt
ggtcacctgagctgggtgtcgtgtgtgcagttttctccagacggctcgctcctgctttca
gcctcggatgatcacatgatcagactgtggaagaccgagcgtgtgcacacatcttcagcc
gtggctctgaagagggactttgatgttctcttcagtcaggaggacattacagtggtggca
gcagacagccagaactgcttacaggtgtgttcaggcccggagggaaaagtactgcttgag
actgccagacaggaacagaggattcgttgcgtgtgtatctgcaagcagacgtccaccgtg
gctctgggcatggaggacggcagtgtgcgggtgctcgaggttccctcgggtaacgtttta
gcaacactgcaaggtcacaccaaaaccgtgcaccattgcctcttcaccgatgacgggcaa
accctaatcacagcctcggaagactctacaatccgggtgtggcaatggaggacaggagag
tatctggaattaaaaggccataaggagcaagtgagaaggtttcaacttctaaattcatcc
tctgctctgctgtcatggtcatttgatggcactgttaaggtgtgggatctgaagtcagga
gagaagctccaggacctgcagtgccatcaaggtgctgttctatctggtgacgtatcccct
gatggactccttttctccaccacctcagcggacaagacggtgaaggtgtggagctgttca
tcatggaagatggtgtttttcctggaaggccacaaggcgtgcgttcgcagctgccgcttc
tccggagacaacaagcgcctcgctaccggtgatgacaatggagagatcaggctctggaac
atgctgaatggaaagctgctgaagatctgctcccgggagagcaaggattcgatggattcc
ttccatggaggctgggtgactgatctgcacttctctcctgatagcaaggtccttgtatct
actggtggatacatcaagtggtggagtgtggacaaaggagaagccctgcagaccttctac
accaccgggaacaacctgaagcgcatctgcgtctctcccgacttcaaaacgttcatcacc
atcgacaacataggaatcctgtacgtcctgaagcaggtgaaacgcaggtggaccgtctaa
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integrated database retrieval system
