Silurus meridionalis (southern catfish): 124393322
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Entry
124393322 CDS
T08004
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124393322
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Protocadherins
124393322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
AGRB_N
Motif
Other DBs
NCBI-GeneID:
124393322
NCBI-ProteinID:
XP_046717021
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All DBs
Position
11:complement(5400844..5403811)
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AA seq
819 aa
AA seq
DB search
METLRIKMRRKWWIAGLFYAFAVWNITEAQIRYTIPEEQIEGTVVGNIAKDLDLKLSDVF
ERNVRIALESGKQYFGVDQAKGELVVKEKFDRENLCGQKATCILTLEAIAENPLQLYRFE
IEIQDINDNSPVFQNKESTLNIAESTAPGTRLRLESAHDPDVGSNSLRTYALSKNDYFAL
DVKIAKDGSRVPELVLETSLDREKQSIVSLTLTALDGGKPSRSGTTKISVRVLDSNDNAP
VFEKAQYDEQITENTAPGAVVFTVRATDQDEGANKEINYSFGPHTPDIISNLFSVDRVSG
DVKVKTNIDYETDRSFDFDIVARDKGSPPMEGVCSVHLDVLDMNDNAPEIILISSPSPVR
EDAPAGTVVALISAKDLDNGDNAKVTLTLLPGTPFSLKSSLSNHYTLITDQKLDRESHSA
YNVEIVAADSGSPQLTSKQEIPVSVVDVNDNTPVFTQSSYVVHVKENSAAGSILCSVSAS
DLDQGENAKISYSLLDSRVLDSPLSSYIYINSDNGSIFSMHSFDHEKMKVFQILVQAKDH
GSPTLSSNTTVHVFIVDQNDNAPSVIYPSALMGSVSHQRMPRSAKAGHLVTKVTAVDADS
GHNAWISYRLAEATDASLFTVTVHTGEVRTKRSVSEQDDSSQRLIIEIKDNGDPGQSTTV
TVDILIEDSFQEPISDFRHKNTKPENKSSKITLYLIIALASVSLLCLLTFFVLLVKCARS
SRGSSSCCIRQSDCEYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFGSYLSPMSEF
SDFTLVKPSSTTDFTNTLSVLDASLPDSTWTFESQQVRV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggagaccttgaggataaaaatgcggagaaaatggtggattgccggtctgttctatgcg
tttgctgtgtggaatataaccgaggcgcaaattcgctacacaataccagaggagcaaatc
gagggcactgttgttggaaacatcgcaaaagatctggatttaaaattgtctgacgtattt
gagcggaatgtacggattgctctcgagtctggtaagcagtattttggtgtggatcaagca
aaaggtgagctggttgtaaaggagaaatttgacagggagaatttatgcggtcaaaaagcc
acttgtattcttactctggaagctattgcagaaaatcctttacagttgtatcgctttgaa
atagaaattcaggacattaatgacaattctccagtttttcaaaataaagaaagcacgtta
aatattgcggagtcaaccgcgcctggtacaagattgcgtttggaatcagctcatgatcct
gatgtgggatcaaactcactgcgcacttacgcactgagcaaaaacgattattttgcacta
gatgtgaaaatcgctaaagatggatctcgtgtgccagagctcgtattagaaacatctttg
gacagagaaaaacagtcaatagtcagcctcacactcactgctttagatggcggaaaacct
tcaagatccggtacaacaaaaatatccgttcgcgtccttgactcaaatgataacgctccc
gtttttgaaaaagctcaatatgacgagcaaatcacagaaaacacggccccaggagcagta
gtgtttactgtcagagctacagaccaggatgaaggcgcaaataaagaaataaactattcg
tttggtcctcacactccagacattatcagcaatttgttttctgttgatcgagttagtggt
gatgttaaagtgaaaactaatatagactacgagaccgacaggtcctttgattttgatatc
gtagccagagacaaaggcagtcccccaatggaaggtgtgtgtagtgtccatttagatgta
ttagatatgaacgataacgcaccagaaattattttaatatcttcacccagtcctgtccgg
gaagatgctcctgctggcacagtggtagctttaataagtgccaaagatttagacaacggt
gataatgctaaggttacattgacgttattacccggaacgccattttccttaaaatcatct
ttatcaaatcattacacattaattacagatcagaaattggacagagaatcgcactctgca
tataatgttgagattgttgctgcggattcaggatcaccacaactcacatctaagcaagaa
atacccgtcagtgttgtagatgtaaacgataacacacctgtttttacacaatcgtcatac
gttgtccacgtgaaagaaaacagcgctgctggatcaatattgtgttctgtgtcggcttcc
gatctagatcagggcgaaaatgcaaaaatatcttattcacttctagattccagagtactg
gactcgccattgtcatcttatatctacataaattcagataacggtagtatttttagcatg
cactcgtttgatcatgagaagatgaaagtgtttcagatactggtccaagcgaaagatcat
ggctctccgactctgagcagtaatactacggttcatgttttcattgtggaccagaacgac
aacgccccttctgtgatttacccctctgcactcatgggctccgtctctcatcagaggatg
ccccgctccgctaaagcaggacacctcgttactaaagtcacagcagtggacgctgactcg
ggccataacgcctggatttcctatcggctagcggaggccacggacgcgtctctcttcact
gtgactgtacatacaggagaggtgaggactaagcgctctgtttcagagcaggatgactcc
tctcagagactgattatagagataaaggacaacggagaccctggacagtccaccacagtc
acagtggatatacttatagaggacagctttcaggaaccaatctcagactttagacacaaa
aacacaaaacctgagaataaaagcagcaaaatcacattatatctcatcatcgctctcgcc
tccgtttcgttgttgtgtttgctgacattttttgtcttgttggtcaaatgtgctcgaagc
agtagaggcagctcgagttgctgtatcagacagagcgattgtgaatataaaaacccaaat
aggaaccttcagatccagctcaacactgatggacccattaaatatgtggaggtgctggga
ggagacatgatgtctcagagtcagtcgttcggctcctatctgtctccaatgtccgaattc
agtgatttcaccctcgttaaacccagcagtaccacagactttacaaacactttgagtgtg
ctcgatgcctcattaccagacagcacgtggacgtttgagagtcagcaggtgagagtgtga
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