Silurus meridionalis (southern catfish): 124397827
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Entry
124397827 CDS
T08004
Symbol
rb1
Name
(RefSeq) retinoblastoma-associated protein
KO
K06618
retinoblastoma-associated protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04110
Cell cycle
smeo04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
124397827 (rb1)
04218 Cellular senescence
124397827 (rb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124397827 (rb1)
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124397827 (rb1)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124397827 (rb1)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
124397827 (rb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rb_C
RB_A
RB_B
DUF3452
Motif
Other DBs
NCBI-GeneID:
124397827
NCBI-ProteinID:
XP_046723604
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All DBs
Position
15:complement(15259271..15298886)
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AA seq
903 aa
AA seq
DB search
MPPKKRSSGSGTPPSKEAKLSNKKESSVLSPEKHKEKDPEFVDLCKDLSLSNVVCDQAWM
RWESMANIVNASNKHLWGASVFISAVESENVTFTFTEFQKAVGLSIKQFLTLVRKLDESL
DTISPKVNSAVTRLEKKYEVSLALYQRFVKTCAKIYSVPDEGKRQELLHCSWILFLLAKG
SVLQMEDDLVIAFQLLLCALEFYIKHCSSSLLQPLYKSTRSPPTRTSRRNKAKPRPNEMD
VQLLETLCKESDCSVDEVKNIYQSSFCAFLDSMGLSGSQELPAVETLSKSYEALYHKSKD
FDARLFLTDDETLSPVKAEFTKVEMTPRKNPSGEENVSIPPQTPIRATMHSIQQLRVELT
SVSDRPSVILMGYFKNCTVDPSEDITKRVDRLTQLFCQKFAQAVGQRCEGLGKKRFTLGV
QLYYKVMESMLKSEEKRLSVQNFSTLLNNDAFHSSLLACALEVVLATYVGYSLKNGGSES
PEMNLCFPWILDVFQLHAFDFYKVIESFIKAEPTLKHEMVEHLGRCEQQIMESIAWKSGS
LLFELLRLSREDGSGEQAEPPATLNQPLQHNHTAADLYLSPVRPSRRVAPPPPPPAAAAA
AAAVAEADIPALPPSHPPAPGTRQHRSNSLSLFYKKLYRMAYLRLKMLFSQLLTSHPELE
VIIWTLLQHTLQNEYELMKDRHLDQLMMSAMYAICKVKNVDLRFKTIVTAYKELPNTNQE
TFKRVLIRDGQYDSIIVFYNLVFMQKLKTNILQYASIRPPPLSPIPHIPRSPYMYPSSPL
KVPGGNLYISPLKSSRLTPAAMTPRSRILVSIGESFGTSDKFQKINQMVSSTDWPLKRSL
AGDSIPKPLKRLRFDADGQDEADGSKPNGESTLDKKLAEMSSVRNRMQEQKMKEEAEKED
PEP
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccaaaaagcgcagcagcggcagcgggacgcctccgagcaaagaggcgaagttg
agcaacaagaaggagagctcggtgctctccccggaaaagcacaaagagaaggatccagag
tttgtagacctttgcaaggacctttcgctttccaacgtggtgtgcgatcaggcatggatg
cggtgggagtcaatggcgaacatagtcaacgcctctaacaagcatctctggggagcaagt
gtgttcatttcagctgtggaatctgagaacgtcacgttcacctttactgaatttcagaag
gctgttggtctgagtataaagcagtttctcaccctggtgcgaaagctggatgaaagcctg
gacacaataagccctaaagtgaactctgccgtaacgaggctcgagaagaaatacgaggtg
tcgctggctctctatcagagatttgtgaaaacatgtgcaaaaatctatagtgtgcctgat
gaagggaagaggcaggagcttttgcactgtagctggatcttattccttttggctaaagga
agtgttctgcagatggaagatgatctggtgatagccttccagttacttctgtgtgctctg
gagttttacatcaagcactgctcgtcctccctactccaacctctctacaagtcgacacga
agtcctccgacccggacctccaggcggaacaaagccaaaccccgtcctaatgagatggac
gtgcagttgctggagacgctgtgtaaggagagcgactgcagcgtagatgaggtgaaaaac
atctaccaaagtagtttctgtgccttcctggactccatgggcttgtcaggatcacaggaa
cttccagctgtggaaactctatccaaaagttatgaagcgctctaccataaaagcaaggac
tttgacgcacgactgttcttaactgatgacgagactctcagccctgtcaaagcagaattt
acaaaagtagaaatgactcccagaaagaatccgtctggagaggagaatgtctctattcca
ccacagaccccaatcagagctacaatgcattcaatccagcagctgagggttgagcttaca
tcagtcagtgaccgcccttcagttattctcatgggttacttcaagaactgcactgtggac
ccttcagaagacatcacgaagcgtgtggaccggctcactcagctattctgccagaaattt
gctcaagctgttggtcagcgctgtgaaggcttgggcaaaaagcgatttactttaggtgtc
caactttactacaaagtcatggagtcgatgcttaagtcggaagagaaaagactctccgtt
caaaatttcagtacacttctgaacaacgatgcgttccactcctcactccttgcctgtgca
ctggaagttgtcctggcaacttatgttggttattccctgaagaacggaggcagcgaatct
cccgaaatgaacctgtgcttcccctggatcttggatgtcttccagcttcacgcctttgac
ttctacaaagtgatcgaaagcttcatcaaggccgagcccactctgaagcacgaaatggtc
gaacacctgggccgctgtgagcagcagatcatggagagcattgcctggaaatcgggttct
ctcctgtttgagctgctgaggctgtcgcgtgaggacggttctggagagcaagcggaacct
cctgccaccctgaaccagccactacagcacaaccacacggcagctgatctatatctgtct
cctgtgcgtccgagtcgtcgagttgcaccaccaccaccaccaccagcagcagcagcagca
gcagcagcagtagcagaggcagacataccagccctgcccccatcacatccccctgcccca
ggcaccagacagcatcgctccaactccctcagcctcttctataaaaaattatacagaatg
gcctaccttcgactgaaaatgcttttctctcaacttctgacctctcatcccgagctcgag
gtcatcatatggaccctgctccagcacacactccagaacgagtatgagctaatgaaggac
cgacacctagaccagctgatgatgtctgccatgtatgccatttgcaaggtgaaaaatgtg
gatttgcgcttcaagacaatagtcacggcatacaaagagcttcccaacacaaaccaggag
acttttaagcgtgtgctcatcagagacggccaatacgattccattatcgtcttctacaac
ttggtgtttatgcagaagttgaagacgaacatcctgcagtacgcgtctattcggccccct
cccctgtctcccattccacatattcccaggagcccctacatgtatcccagctcccccctc
aaagtgcctggtgggaacctctacatctccccgttaaagagcagtcgtttgaccccagca
gccatgacacctcggtctaggatccttgtgtccattggagaatcgttcgggacctcagac
aagttccagaagatcaaccagatggtcagtagcacagattggcctctgaagaggagccta
gctggagactccatccccaaacctctgaagcgcttacgttttgatgcggatggacaggat
gaagctgatgggagtaaaccaaatggtgaatccacactggataagaagctggctgagatg
agttcagttcgcaatcgcatgcaggaacagaaaatgaaggaggaggccgagaaggaagac
ccagagccctga
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