Silurus meridionalis (southern catfish): 124398976
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Entry
124398976 CDS
T08004
Symbol
kdm2aa
Name
(RefSeq) LOW QUALITY PROTEIN: lysine (K)-specific demethylase 2Aa
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124398976 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124398976 (kdm2aa)
04121 Ubiquitin system [BR:
smeo04121
]
124398976 (kdm2aa)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124398976 (kdm2aa)
Enzymes [BR:
smeo01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
124398976 (kdm2aa)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
124398976 (kdm2aa)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
124398976 (kdm2aa)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
124398976 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
124398976 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
PHD
Cupin_8
zf-RING_15
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
124398976
NCBI-ProteinID:
XP_046725533
LinkDB
All DBs
Position
2:complement(9779327..9799376)
Genome browser
AA seq
1313 aa
AA seq
DB search
MEDREETLRLVDGGVLKKPGRKRKRKNEDEDVTLKRSGTRRRYHDDGISDDEIDGKRTFG
LEEKVYSERFGSDRIKRMEGKDFTFEFIQKGGLRDPIIFERPDGLGINMPDSDFSVNDVK
MFVGSRRMIDVMDVATQKGTEMSMAQWRRYYETPPSQREKLYNVISLEFSHTKLENLVSR
PTTVDMIDWVDNMWPRHLKERQRDSTNSIIDMQYPKVQKYCLMSVQGCYTDFHIDFGGTS
VWYHILRGCKIFWLIPPTPQNLDMYENWVLSGKQSDIFLGDKATECQRIELKQGYTFIIP
SGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNICNIEDRTRVPAKFRYPFYYEMCWYVLER
YVYSLTNTSYLIPEFQKHSLGIGLKRESSSSEVLNGHIKEDDDPPSPPTRPGMKVHMTPF
ELEGLWNLLGKLESLPSQKKCVPAGIHNAPALLHDMRALLKEHANDNPKLSYTGKPIVKW
PKRPSWYQPPQPPVPVGRPKLATTPIVPRPTKPASSMSALRRRRVRCKRCEACLRPECGE
CNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSAVCEICEEGSQDTGEELMECSNCAQIA
HPSCLKVSGEGVVNKDLPSCWECPKCVIGKDTDSESSGSGDDLTTQEGSGGLRGEGGVWP
GVGRPPSALSHGSLRKQVAAPEQRLRKRIKLEPGKMHKRKSSSMDPRVAKIYRRPDSGSE
DDEGEGRRKLSIQSKGAVSAHRGFASSRRGLLRSSSQRGGRGSGGMTTNSSSLKMRRGLG
VRGERGSRVRLRGGSKMQRRRYETDDDDDDDDDDDDDDEEDDDDEEDEEDESEDERQIGR
SGKDHRSRHRRRRGDEDDEDDDEDDESEEQDFDEEDEEMEDLDDGGQEDDDDDGENRSDS
DPDPPVLLVSDLNDELLNGSYLTVTLQRPSKAKRDPGSIVPKLEAAMSPRNPGNADLLQR
KSFQKYRQKNGSSLSTGNGFSQPKASLSSVRHTRHRNLNFDGRASPSSTYSRSCISPPPP
HLTSTTGFSPPSLLTHPSFRDVGNEPGCEKEVWVSVFRYLSRTELAVCMRVCKAWYKWCY
DKRLWSRIDVSRCRSLSAQALSAIIKRQPVTLDLSWTPVTKKQITWLIHNLPGLKDLILA
GCSSSCFLGLSSQNLPCLRTLDLCWAESIKDSQLKDLITLSGSENRSRLKGLLXLGLSGL
NVSDSILKLIIKHLPLLRRLDLSHCPVLTDQSISLLTASGSNTRNTLRELNLAGCQKLTD
VCLNYMKRLSALTLLDLRGCRSITRHGCENFISDLSYCTFFCLTEDKLIQRIS
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagagaggagacacttagacttgtagatggcggtgtgttgaagaagccaggc
aggaagaggaagagaaagaacgaggacgaagatgtgacactgaagcggtcaggcacgcgg
cgacgttaccacgatgatggcatctctgatgatgaaatcgatgggaaaaggacctttggc
ctggaggagaaagtgtacagtgaacggtttggttcggacagaatcaaacgtatggaagga
aaagatttcacatttgaattcatccagaaaggcgggctgagggatccaattatctttgaa
cgacctgatggacttggaatcaacatgccagattcagatttcagtgtgaacgatgtgaag
atgtttgtgggcagtcggcgaatgattgacgtgatggatgtagctactcagaagggcaca
gagatgtctatggctcagtggaggcgatactacgagaccccgccatcccagagagagaag
ctgtacaacgtcatcagtttggagtttagccacaccaaactggaaaatttagtcagtcga
cctacaacagtggacatgatagattgggttgacaatatgtggccacggcacttaaaggaa
aggcaaagagactccaccaactcaatcattgatatgcagtaccctaaagttcaaaaatac
tgtctgatgagcgtgcagggctgttatacagacttccacatagactttgggggcacgtct
gtgtggtaccacatattgcgaggatgcaagatattttggctaattcccccgacaccgcag
aacctggacatgtatgagaactgggttttatctggcaaacaaagtgacattttccttgga
gacaaggccacagagtgccagcggattgaactcaagcaaggctacacatttattatccct
tcaggctggattcatgcagtgtacacacctgtggacacacttgtgtttggtggaaatttc
ctacacagttttaacatcccaatgcagcttaatatctgcaacattgaggacagaacaagg
gtgccagctaaatttcgctacccattttattatgagatgtgttggtatgtgctggaacgg
tatgtgtacagtctgaccaacacctcctacctcatccctgagtttcagaaacactctcta
ggcatcggtctcaagcgagaatcctccagttctgaagtcctgaatggtcatataaaggaa
gacgatgatcctccctcacctccaactcggccagggatgaaagttcacatgactcctttt
gagctggagggtttatggaatttgctaggaaaactcgaatctcttccctcacaaaaaaag
tgtgttcctgcaggaatacacaacgcacctgccttgctccatgacatgcgggcattactt
aaagaacatgcaaatgataaccctaaactttcatacactggaaagcccattgttaaatgg
ccaaaaaggccatcctggtaccagcctccccagccccctgtcccagtaggtcgtcccaaa
ttagccaccacgcctatcgttcctcgtccaacaaaaccagcttcctcaatgtctgcgtta
aggaggcggcgcgtgcgctgtaagcgatgtgaggcatgtctgcggccagaatgtggcgag
tgcaatttctgcagagatatgaagaagtttggtggccctggcaaactgaaacagacatgt
gtccttcgccaatgccttgctcctggtttgcctctgtctgcggtgtgtgaaatttgtgaa
gaagggagccaggatactggagaagaacttatggaatgttccaattgtgcgcagatcgcc
caccctagctgcttaaaggtttcaggtgagggtgtagtaaacaaagatctgcctagttgc
tgggaatgtccaaaatgtgtcataggcaaagacacagactctgagtcatcgggcagcggt
gatgaccttacaactcaggaggggtcggggggtttgaggggcgagggcggggtgtggcct
ggggtcgggcggcccccttccgctctgtcacatgggtcgctacggaaacaagtggcggcc
ccagagcagcggctcaggaagaggatcaaattggaaccaggcaaaatgcataaacgcaag
tcatcctcgatggatcctcgcgtggctaaaatctaccgcagaccggattcgggcagtgag
gacgatgaaggagaaggaagaagaaagctatcaatccaatcgaagggtgcagtatctgca
catcgtggatttgcgtccagtaggcggggtctgttaagaagctcatcacaacgagggggc
agagggagtggtggcatgaccacaaattcttcttccttgaaaatgaggcgtggacttggt
gtaaggggtgagcgcggaagtcgtgttcgtttacgcggtgggtccaaaatgcagagaaga
cgttatgaaacggacgacgatgatgacgacgacgacgatgatgatgacgacgacgaagag
gatgatgatgacgaggaggatgaagaggatgaaagtgaagatgaaaggcaaataggcagg
tctggaaaagatcaccgttcacggcatcggcggcgcagaggtgacgaggatgacgaagac
gacgatgaggatgatgaaagtgaagaacaagactttgatgaagaggatgaagagatggaa
gacctagatgatggaggtcaggaagatgacgatgatgacggcgagaaccgttcagactcg
gaccctgacccccctgttctgcttgtctcagatttaaacgatgaactgttaaatggttct
tatctgaccgtcacgttacagcgtccatcaaaagccaaacgtgatcctggttctattgta
cctaagctggaggcagcgatgtctcctcgcaatcctggtaatgccgatttactccagcgc
aaatcctttcaaaagtatcggcagaaaaatggcagctctctctccactggaaatggtttt
tcacagcccaaagccagtttatcatcagtccgtcatacacgccacaggaatttgaacttt
gatggtagagcctcaccttcttccacctactctcgctcatgcatttctcctcctcctccc
cacctgacatctaccaccggcttctctcctccttcccttcttactcatccctcgttccgg
gatgtgggcaacgagccagggtgtgagaaggaggtgtgggtgtcagtctttcgctacctg
agccgaacagaactggctgtctgcatgcgggtttgcaaagcctggtacaaatggtgttac
gataaacgattgtggagtcggatagatgtcagtaggtgtcgctccctcagtgctcaggct
ctgtcagctattattaaacgccagcctgtgacacttgacctgtcctggacacctgtgact
aagaaacagatcacctggcttatccataatcttccaggtttgaaagatctgatcttggca
ggctgttcttcatcatgttttttggggttgagctctcagaacttaccttgtcttcgcacg
ctggacctctgttgggccgagagcattaaagactctcagcttaaagacctaatcactcta
tcaggtagtgaaaatcgcagcaggctaaaaggcttgttanntctggggttatctggtctg
aatgtgagtgactccatactgaagcttataatcaaacacctgccgttgctgaggaggtta
gacttgtcacattgccctgtccttaccgaccagtccatcagcttgcttacagccagtggc
tctaacacacgcaacaccctgagagagctcaacctcgcaggttgtcaaaagctgacagat
gtctgcctgaattatatgaagcgactctccgctcttactttattggacctgcggggctgt
aggagtatcacgagacatggctgtgaaaacttcatttcggacctttcctactgcaccttc
ttctgtctgactgaggataaactcatccagaggatatcttaa
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