Silurus meridionalis (southern catfish): 124399288
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Entry
124399288 CDS
T08004
Symbol
ddx58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04622
RIG-I-like receptor signaling pathway
smeo04623
Cytosolic DNA-sensing pathway
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124399288 (ddx58)
04623 Cytosolic DNA-sensing pathway
124399288 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124399288 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
smeo04054
]
124399288 (ddx58)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124399288 (ddx58)
Pattern recognition receptors [BR:
smeo04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
124399288 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
SNF2-rel_dom
PhoH
AAA_19
Motif
Other DBs
NCBI-GeneID:
124399288
NCBI-ProteinID:
XP_046726086
LinkDB
All DBs
Position
16:complement(16820779..16829543)
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AA seq
944 aa
AA seq
DB search
MYELEKELLRRFSTTITHFLRPSYIRGFLTNYLDEETVERILSEEKSSGTTAAQMLLDRM
LELEEVGWFQAFLDILLVSEYTGLHIAISKWDFAELEALNPHRRLLDQVEMSITKNMKPR
ELLPHMSNCLTQRECEEIRALEEQKGCMAASVRLVECLRHSDKSNWFKEFKLALQNCDQN
LALQLLEPDENGNCAQHCEENDVVMTTVCFEYREDGESDDLMSNSELSETEQSVKGAEGG
MASDSERHMELREYQKELATAACDGLNTIVCAPTGCGKTIVALAICEHHLKKYPEKAKVV
FMATKVEVYEQQCKLFKKYFSKEPSIRVQGVCGEMANINLRTQVASSDVLVMTPQILVNG
LQRGDVTSLNTFTLLLLDECHNTTGKHPYKNIMSIYTDIKHTNNNTHSLPQVVGFTASVG
IGSFKNVKEAESNICLLCANLDTRVITTVTKNIDELRSFVHTPEKLFYLVTPCTSDPFIL
ILKNIMKSIENLSNKVFNIATVSQVQKGDYGSQMYEQWIVDVQKRCRLLRFNDPEEERRV
CRALYTYTEHLRKYNDALIINEDARTKDALDFMDAFIRDLSNATPDPTELQLTDLYQAQH
EQLCHLAAEGEQNPKLQELKFILDEEYSNNQQTRTVLFVRTRALADALKKWIEETDSLKF
LKPGVLIGRGRKSQLSGSGMTLTGQKGVLDTFKSSNESKILIATSVADEGIDIPQCNLVL
MYEYVGNVVKMVQVRGRGRAHGSRCFLISSKQERIDKEKLNMEREELVEAAIKNLQCSPE
ILRAKVDRFQKEDVARRSYVNLSGEKTLTEGSYELLCGKCKKFGCFSDDLRVLQESHHIV
MDRSIFQRCGTKPHAKPKTFDNITKTKKMFCLDCKLDWGIIASYMNIQDLPVVKIESFIV
QDRVTKKQTLFRKWRDVTFYMREFDVTETAGGDVGAENDETKTK
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggagaaggagcttctgcgccgcttcagcaccaccatcacccacttctta
cgaccttcttacattcggggatttctgacaaactacctggatgaagagactgtggagagg
atcttatcggaggagaagtcatcagggacgacggcggctcagatgctgctggacaggatg
ttggagctggaggaggtcggctggtttcaggccttcctggacattctgttggtttcagag
tacacaggtctccacatagcaatcagtaagtgggactttgcggagctggaggctctgaat
cctcacaggaggctgctggaccaggttgagatgtctatcaccaaaaacatgaaaccaaga
gagctgctgccccacatgagcaactgtctcacacagcgagagtgtgaggagatcagagcg
ctggaggagcagaaggggtgtatggcagcgagtgtgcggttagtagagtgtctgagacac
tctgataaatcaaactggtttaaagagttcaaactcgcactgcaaaactgcgatcagaat
ctcgctctacagctactggagcctgatgagaatggaaattgtgctcagcactgtgaggag
aatgatgtagtcatgacaacggtgtgttttgagtatagagaagacggcgagagtgatgac
ctgatgagcaacagtgaattgagtgagactgagcagagtgttaagggagcagaggggggc
atggccagtgatagtgaaagacatatggagttgagagagtatcagaaagagctcgctaca
gctgcatgtgacggcctgaacaccatcgtctgtgctccaacaggttgtggtaaaaccatc
gttgccctggcaatttgtgaacatcacctgaagaagtatcctgagaaggccaaagtggtt
tttatggcaaccaaagttgaggtttatgaacaacagtgcaaactgtttaagaagtatttc
agcaaggagcccagcatccgggtacaaggtgtgtgtggggaaatggccaatataaacctg
cgcacccaggtggccagcagtgacgtattggtgatgactcctcagatcctggtgaacggt
ctgcagcgcggcgacgtgacgtctctaaacaccttcacactgctgttgctggacgagtgt
cacaacaccactggcaaacacccatacaagaacatcatgagcatctacaccgatatcaaa
cacaccaataacaacacacactcactgccccaggtggtgggcttcactgcatctgtgggt
atcgggagttttaagaatgtgaaggaagcagagagcaacatctgcctgctgtgtgcgaac
ctggacacccgagtcatcactacagttaccaagaatatcgatgagctcaggtcattcgtg
cacacacctgagaaacttttctatctggtcacaccgtgtacctcagaccctttcatcctc
atcttaaaaaatatcatgaagagcatcgaaaatctgtctaacaaagtcttcaacattgcc
acagtgtcgcaggtacagaaaggtgattacggcagtcagatgtatgagcagtggattgtg
gatgtacagaaacgctgcagattgctacgcttcaatgatcctgaagaggagcgcagagtc
tgcagagcactttatacctacactgaacacctccgaaaatataatgacgctctgattatt
aatgaggacgcccgcacaaaagacgcgctggacttcatggatgcattcattagggacctc
agtaacgctaccccagaccccactgagctccagcttactgatttataccaggctcagcac
gagcagctgtgccacttagctgctgaaggagaacaaaaccccaaactgcaggagctcaag
ttcatactggatgaagaatacagcaacaaccagcagactcgcaccgtgctgttcgtcagg
acccgcgccctcgctgatgctctaaaaaagtggatagaggagacagattcactaaagttt
ctgaaacctggggttctgattggaagaggaagaaaatcgcaactgtcaggctcaggcatg
actctaacaggacagaagggtgttctcgacacctttaagagctccaatgaaagtaagatt
ctcatcgccacctctgtcgctgacgagggcatcgatatcccacaatgcaacctggtgctc
atgtatgagtacgttggaaatgttgtgaagatggtgcaggttcgaggtcggggcagagct
catggtagcaggtgttttctgatctccagcaagcaggagcgcattgataaagagaaattg
aacatggaaagggaggagctggtggaggcggccattaaaaacctccagtgttcacctgag
atcctgcgtgccaaggtggaccggtttcagaaggaggacgtggcccggcgatcttatgtt
aatttgagtggagagaaaactctaactgagggaagttatgagctcctgtgtggaaagtgc
aagaagttcggctgttttagtgatgacctgcgtgttctacaggaatctcaccacatcgtg
atggatcgctccatattccagcgctgtggcaccaaacctcacgctaaacccaagaccttc
gacaacatcaccaaaaccaaaaagatgttctgtttggactgtaaactcgactggggtatc
atcgcctcctacatgaacatacaggatttgccggtggtgaagatcgagagtttcattgtt
caggacagggtcacaaagaaacaaacattatttaggaaatggcgtgatgtcacattctac
atgcgagagtttgacgtgacagagacggctggtggagacgtgggagccgagaacgatgag
acgaaaacgaaataa
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