Silurus meridionalis (southern catfish): 124400116
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Entry
124400116 CDS
T08004
Name
(RefSeq) DLA class II histocompatibility antigen, DR-1 beta chain-like isoform X1
KO
K06752
MHC class II antigen
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04145
Phagosome
smeo04514
Cell adhesion molecule (CAM) interaction
smeo04672
Intestinal immune network for IgA production
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
124400116
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124400116
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
124400116
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124400116
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124400116
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124400116
Exosomal proteins of epithelial cells
124400116
Exosomal proteins of breast milk
124400116
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Paralog
GFIT
Motif
Pfam:
C1-set
MHC_II_beta
C2-set_2
Ig_3
Ig_2
C2-set_3
Ig_LY6G6F
Cna_B
DUF5562
Motif
Other DBs
NCBI-GeneID:
124400116
NCBI-ProteinID:
XP_046727680
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All DBs
Position
17:1360867..1378063
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AA seq
235 aa
AA seq
DB search
MLDTINGYYHERRSQCIYSSRDLSDMVLIDDYIFNKIKWIWFNSTVGKFQGYNEHGIYNA
KLWNNDTAYLAGERAAVENFCKHNAQIYDTAIIDKSVAPEVMVTSVKKSDGSHPAVLMCS
AYNFYPKIIKVTWMRNGKEVKGGQTSTEEMADGDWYYQIHSHLEYKPESGEEISCVVEHA
SFKKPMIYKWDPSMPESDKSKIAIGASGLVLGIIISAAGFIYYKKKHSGRILVPT
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgttggacacaataaatggatattaccatgagaggagatcacagtgcatttacagctcc
agagatttaagtgatatggttctcattgatgattacattttcaacaagattaagtggata
tggtttaacagtacagtggggaagtttcagggctacaatgagcatggcatttataatgca
aagttatggaacaatgacacagcatacttggcaggagagcgagctgctgtggaaaacttc
tgtaaacacaatgcacagatctacgacacagctataattgataaatccgttgcgcctgaa
gttatggtgacatcagtgaagaagtcagatggatcacatcctgctgtgttgatgtgcagc
gcttacaacttctacccaaagatcattaaagtcacctggatgaggaacggtaaggaggtt
aaaggaggtcagacgtccactgaggagatggctgatggagactggtactatcagatccac
tctcacctggagtacaaacctgaatctggagaggagatctcctgtgtggtggaacacgcc
agcttcaagaaacccatgatctataagtgggacccgtccatgcctgaatctgataagagt
aagatcgctatcggagcttcagggttggtgttggggatcataatctcagcagctggattc
atctactacaagaagaaacactcaggacggatcctggtgccgacataa
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