Silurus meridionalis (southern catfish): 124401019
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Entry
124401019 CDS
T08004
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124401019 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124401019 (irf5)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
124401019 (irf5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
124401019
NCBI-ProteinID:
XP_046728864
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All DBs
Position
18:16811867..16840080
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AA seq
478 aa
AA seq
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MSAQPRRIRLKPWLLAQVNSGKYPGLNWLNKESRLFQIPWRHATRHLPTPEEENTIFKAW
AQETGKYQEGVDEPDPAKWKANLRCALNKSREFMLKYDGTKETPMQPYKIYEVCDLPVNG
DEGEDEEEELPNVAHLSINPLASELPSYPAFPANPVDRFLVPIMPPVFPDHGHIVPNMKQ
KEHLLREPVPNGHGLVNRAIAPSAVPHAVDMTDTLVDSPMPEVRPEVESQVQSCVSDLLT
NPHMLPLTDLDIKFQYRGHTVGSMTVSNPQGCRLYSGNLAPTPEQVELFGPITLHQVLFP
EAAIIQNEKQRFYTEHLLDVMDRGLILEIQGQDIYAVRLCQCKVFWSGPGVPEGGQPNPM
ERERKINVFSLNNFLQGLIMYQKGEVPNPPPFEIYFCFGEDWPDRKPKEKKLIIVQVVPV
VARILTEMFSGELSWSTDSIRLQISNPDLKDQTVEQFKELHRLLQNQQAQASWHQTIH
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcccagccaaggagaatccgtctgaagccatggctgctggctcaggtgaacagt
ggaaaataccccggcctcaactggctcaataaggagagtcgcttatttcagataccatgg
agacatgccacacgccatctgccaacgccagaagaggagaacactatattcaaggcttgg
gcacaggagacagggaagtaccaggagggtgtagatgaacctgatccggccaagtggaag
gccaacctgcgctgtgcactcaacaaaagccgcgagtttatgctaaagtatgatggtacc
aaagagacaccaatgcaaccatacaagatttatgaggtgtgcgatctgccagtaaatgga
gatgagggtgaggatgaagaggaagagcttcctaatgttgcacatctttccatcaaccct
cttgccagtgagcttccaagttaccctgcattcccagccaatccagtcgatagattccta
gttcctatcatgccacctgtttttcctgatcatggccatatagttccaaatatgaagcag
aaggagcacctactcagggaacctgttccaaatggacatggtctggttaacagggccata
gcaccatctgctgttccccatgctgttgacatgacggacacattggtggacagtcctatg
ccagaggtgaggcctgaagtagagagccaagtgcagtcatgcgtctctgacctgctgacc
aatcctcatatgctacccttaacggacctcgacattaaattccagtatcgtggccacacc
gtgggctctatgactgtgagtaatcctcagggctgtcgtctttattctggcaatttggca
ccaacaccagagcaagtggagctattcggacccatcacactgcaccaggtcctgtttcct
gaagctgctataatccaaaatgagaagcagcgcttctacactgagcatctcctagatgtg
atggaccggggcctcatcctagagatccaaggccaggacatctacgctgtgcgtttgtgc
cagtgcaaagtgttctggtccgggccgggagtgcctgagggcggtcagcctaatccaatg
gaaagggagcgcaagatcaacgtgttcagtctcaataacttcttgcagggacttatcatg
taccagaagggtgaggtgccgaatcccccaccctttgaaatttacttctgctttggggag
gactggcctgacagaaaacccaaagagaaaaagcttataattgttcaggtcgtgcctgta
gtggcaaggattctgaccgagatgttttctggggagctctcatggtccacagacagcatc
cgccttcagatctccaatcctgatctgaaagaccaaactgttgagcagtttaaggaactc
cacagactattgcaaaatcaacaggcacaagcttcatggcatcagaccatccactaa
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