Silurus meridionalis (southern catfish): 124401588
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Entry
124401588 CDS
T08004
Symbol
dse
Name
(RefSeq) dermatan-sulfate epimerase isoform X1
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
smeo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
124401588 (dse)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
124401588 (dse)
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Gene cluster
GFIT
Motif
Pfam:
DUF4962
Motif
Other DBs
NCBI-GeneID:
124401588
NCBI-ProteinID:
XP_046729947
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All DBs
Position
18:complement(27606605..27616109)
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AA seq
935 aa
AA seq
DB search
MMSSYTRGAPTVFLISAVCVLAQSDWEPSGGEVPFMGGHYSGHPMLYFGREAVPELRRAA
LSTHSELAQQIWRAGEDMLTNPAQFLPPRDPEEFSSRWNEIYGNNLSVLAMFCLLYPQRT
GALSLAREYMDRMAAQPSWLVKDAPWDEVPMAHSLVGFATAYDFLFEFLSETEQERYLQV
LGNASLYMYDKSLQRGWSFQFLHNHQPTNCVALLTASLILLNQGCLQEAYVFVQQVMVIM
EKALVVLRSVVDGSLYEGVAYGTYSTRSLFQYIFLLQRHFNISHFKHPWLLQHFHFLYRT
LLPGFQRNVAIGDSNYNWFYGPESQLVFLDRYVMRNGQANFLAEQIRRHRVQDGPGQPSR
GQKWCTLHTEFIWYDAGLEATPPPDFGKPHLHYFEDWGVVTYGGGLPAGMNHSFLSFKSG
KLGGRTIFDIVHQGRYREWIRGWKNFNAGHEHPDQNSFTFAPKGFPFITEALYGPKYTLL
NNAVLFAPSTNRACFSPWEGQVTEACDSKWSKYKYGAAADCEGRVEAALERQGVVFIRGE
GRGAYSPVLKIKNLQRNLVLLQPDLLLLLDHVHLDAESPAHSISAFFHNTDFPFQHSAER
EGVHGAFVQHGQDEYTMLWRDDTGYSGEADTAYWTYPHGYPYNGSHYVNVTMSLRFPHTR
IAYLFLGPDVEVLSFSLRGDMERIDVHLTTRDHTFTIHILTSENPSKPLFAMVLKDRLEK
VVFERAAAVQERPLVEMQGYIHLVEQNLQLLKPVFQQFERQVKTRILNAEGFHEITERLR
KTSEKKRKLKKKVASAVEKMFSVTKKPRKVKGLKKAIGKLLNEAGEKQQGALRPDGNADE
GHAHRSKKVKIIPGHVFKEFHTAAVVSGTEASVSFSYIRVFLVLNIGAFFLLLTVLLTQL
QRAPSLHTQRCIYCILLLDSFILLCLYSSCFHGHC
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctcgtacactcgcggcgcccccacggtgttcttgataagtgcagtgtgtgtg
ttggcacaaagcgactgggagccgagcggaggtgaagtgccctttatgggcggacactac
tctggacaccccatgctgtattttgggcgtgaggcggtgcctgagctgcggagggcagcg
ctgagcacccactctgagctggctcagcagatctggcgtgccggtgaggacatgctcaca
aaccccgcccagttcctcccaccacgagaccctgaagaattttcctcccgctggaatgaa
atctatgggaacaacctgagcgtattagcgatgttttgtctgctttacccacaacgcact
ggggcactcagtctggctcgagagtacatggatcgcatggctgctcagcccagctggttg
gtgaaggatgccccatgggatgaggttcctatggctcactctctggtgggttttgcgaca
gcgtatgacttcctgtttgagttcctgagtgagacggagcaggagcgttatctccaggtg
ctgggaaacgcctctctatacatgtatgacaaatcactgcagagggggtggagcttccag
ttcctccacaaccatcaaccaaccaactgcgttgccctgctgaccgcctccctcatcctg
ctgaaccagggttgtctccaggaggcctatgtgtttgttcagcaggtgatggtgattatg
gagaaggctctggttgtgctgcgttctgtagttgatggatctctgtatgaaggtgttgcg
tatggaacctacagcacacgttctctgttccagtacatcttccttctgcagagacacttc
aacatctcacacttcaaacacccatggcttctccaacactttcacttcctctacaggaca
ctgctgcccggtttccagaggaatgttgccatcggcgactcaaactacaattggttttat
ggccctgagagtcagcttgtgttcctcgatcgctatgtcatgaggaacggccaggctaac
ttcctggctgaacagatacgacgtcatcgtgtgcaggacggaccgggacaaccatcacgg
ggacagaagtggtgtacattacacactgagtttatctggtatgatgccggtctcgaagcc
acgcctcctccggattttggaaagccccatctgcattattttgaggactggggcgtggtg
acgtacggaggaggtctgcctgcagggatgaatcattccttcctgtcgtttaagtctggg
aaacttggtggccggaccatcttcgacatcgtgcaccaggggcgctacagggagtggatc
cgtggctggaagaacttcaacgctggacacgagcatcccgaccagaactcgttcaccttt
gcacctaaaggtttccctttcatcaccgaggcgttgtacggccccaagtacacgctcctc
aacaacgccgttctattcgctccctccaccaaccgtgcctgcttttctccctgggaaggc
caggtgactgaggcgtgtgactccaagtggtcgaagtataagtacggtgctgcagcagac
tgtgaaggtcgtgtggaggcggcgttagaacgtcaaggggtcgttttcatccgcggcgag
ggacggggcgcatacagcccggtgctgaagatcaaaaacctgcaaaggaaccttgttctt
ctccagcctgacctcctgttgctcttggaccatgttcacctggatgctgaaagtcctgcg
cacagcatcagtgccttcttccacaacacagacttcccgttccagcacagcgcagagaga
gagggcgtccatggtgcgtttgtccagcatggacaggacgagtacaccatgctgtggagg
gatgacacgggctacagcggagaagctgatacagcgtactggacatatccacacggatac
ccctacaacggctctcactacgttaacgtcaccatgtcactacgcttcccacacacccgc
atcgcctacctgtttttgggcccagacgttgaagttctcagcttcagcctacgtggagac
atggagaggattgatgtccacctgaccacacgagaccacaccttcaccatccatatcctt
acatcagagaaccccagcaaacctctgtttgccatggtgctgaaagaccgtttggagaag
gtggtgtttgagcgggcagcagcggttcaggagcgccccctggtggagatgcaaggctac
attcacctggtggagcaaaaccttcagctccttaaaccagtcttccagcagtttgagcgc
caggtaaaaacacgcatcctcaatgctgagggattccacgaaatcacagaacgattaaga
aagacctctgaaaagaagaggaagttaaagaagaaggtggcatcagctgtggagaagatg
ttttcagtcactaagaagccaaggaaagtgaaggggttaaagaaagccattggcaagctc
ctgaatgaagctggagagaagcagcagggggcactgagaccagacggcaacgccgatgaa
ggtcatgcacacaggagcaagaaggttaagatcataccaggtcacgtgtttaaagaattc
cacactgcagcggtggtgagcgggactgaagcgtctgtctccttctcctacatacgcgtg
ttcctggtcctgaacatcggagccttcttcctgctgctaaccgttctgctcacacagctg
cagcgagcaccgagtctccacacgcagcgctgcatctactgcatcctgctgctcgacagc
ttcatcctcctctgcctctactcatcctgcttccatggacactgctga
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