Silurus meridionalis (southern catfish): 124402138
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Entry
124402138 CDS
T08004
Symbol
si:ch1073-335m2.2
Name
(RefSeq) LOW QUALITY PROTEIN: msx2-interacting protein
KO
K25100
Msx2-interacting protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
124402138 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124402138 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
124402138 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
124402138
NCBI-ProteinID:
XP_046730839
LinkDB
All DBs
Position
19:complement(18139144..18159981)
Genome browser
AA seq
3231 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEYFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSSVRGLDDAPQSSSHTRDVASFSRAAVGPVYGPPV
SLHTREGRYERRLDGSSDSRERAYEHNPYGHHERSGTFDRPRHYNTDYYRDRAIFASGVG
ASPTVTAIGGGFETPESHFESRIRDPFTLSGSARRDPYRDDRGRRVDRTYHHRRSRSSHS
SQSRHPSPQRTTGQTPKASHSPKRAPVSPGRGPRSRSRSRSSSSDSVSSTSSTGSGSSDS
NSSSSEGSRARSVQSAATHPPPAPPPLSLDCDEPRRSFGIRVQNLPVRSTDTSLKDGLFH
EFKKYGKVTSVQIHGASEERYGLVFFRQQEDQEKALSVSKGKLFFGMMIEVTAWNGPETE
SENEFRPLDGRIDEFHPKATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGVPQ
YAFVQYSDIASVCKAIKKMDGEYLGANRLKLGFGKSMPTTCVWLDGLSSNITEQYITRHF
CRYGHVVKVVFDRLKGMALILYNNTDFAQTAVRETKGWKLGGNKMKVDFASQESQVAFYR
SMQASGQDMRDFYEIPADRRDERRPSYHEFSAERAYYENVRAPGIYPEDPRRDYPARSRE
RYPELDHYQGDHYDPRYHEDPREYRDYRDPFEQDIRKYSYIQRERERERERFEADRSRWS
PSHPRRPITPTASPSPSERISREAERRVYRHSSERSGSCSSLSPTPQFEKAEESPVDFKP
ESLDREGATEADRLSAAEKSKRGRRKEKADREKGEKAKSRRGKVQSPSIPYTEADREPSL
DSNSGKTKGSDVEGSERQRHKVEGEPSPSDLISRLESQKEKLDIAKVESADRDNKGRSKK
HLKSELGTEGKDSLLDSDRLAARKRRFGDPGSKASKQKRGRLEDEQNAVVNQPADSGASN
LKEGESDVKTEKDAHKREHSKSKSERMTSHFRDELDHRSDSQNSSGRQEEHSDTNMETSD
SKSQSGPSVPRRFSNDGTPEKDTKGREEYLDIDLSQSYRKQMEQNRRLRQQLQESDKPGK
TDAPQCVDAEDLEHRSLVHEVGKPPQDVTDNSPPSKSKKQDHLDVEVGTKRERVYRIFRP
KSDESEWSANSPHFNASQHGEEEYTDVSQLVNAKEVKEQPKQEDSSHQDMELTVKRVHTS
QVPKLSTSLHDEQKRWESRLKQDLLPDFSRSSEKRRLTHSYLEYRLWPDLEPGEVRSDSE
EDREHKPNSPMPSTSISFPERHRGDRLSESKLTGSLERNKFCSFALDQTITPDTKALLER
AKSLSSSREDNWSFLDSDSHFASFRSRKDTEKVESTPRPTPSWYMKKKKIRSESEDKLDD
RKEDPKPEEQERRELFASRFFHSSIFEQDSRRLQHLERKHEDPEHGMCYPGNQQGQIEGQ
PDSEPVVLFHDRFLELTRLQQQKGGKEQSQPESKKEEGVDVSDKTQEEVHRGAIEPVEIK
PAEIKPVSPVQAPQSSPVLILPPFPVQETQKSPPSVTIKETSPQPEVCNVDAPSPKLSVK
EEENQSEQPMSSVTFPLQQEPSDLNRSESQDSKLLMNEIKTSPTEELELTSDRDDERRSS
SEKPTNDTQVSYEPKSEPHTKIPELQNSPSPMIIDEGEVRVEKPEPVAVEVEPPAKETES
KGAESYTVDEPISPPPRSRNKKGKASPTTPVAPMTPSNIPDKQSTRKSERIDREKLKRSS
SPRVDSSKANFDGKSTGKSPIHSPDAEQSVEQNTPPVRARRRNVRSVYATPVDDESTQQT
GKDVDSPRGGRKRGVDKDASQQQSEPDSRRRGRPPKNRRQGEDLSAGKSERSKLPEAKEF
EIGETANSETVKVGKGKHSPYINKAANQGTGSGLAKKGEKTDRLSGAINPAEMDVDSQDG
SGQHDGGPSANEKNEEHKPQSILEMKHERISQTESTTGSQNKLGESVQEQSSLDKSMKAK
TARITCSSKLMTEDKSLVLKNLTIRLDMTEVKAMLQTGEDESGHDDCPKKVVPGTSPKEP
IPESRLENEILGEDGNIKESATPPLQVKDPHEALLSHQMELEQAVENIAKLTEEPVPLQF
KNSTESQAPLSELVEGREEDKPANPASETELAAAIDSITSEDLSCGLPQDQVMSTVVDPD
SDIQTLVPDAKVVEGSNSATVQEDTSNMGTPRKAGKGRPKAQKRAKGQKAAVNKKEAIKE
MVVEPEGLSIKTSETMSAAASAAAEIPPAAAAPVIAPVSKQDSSVTAIIPEVPKVIESAL
KEQPDLPKSSNPAASKSPTSLRPNPYECTSPSISPSICLKPSHPSRLSVSPTDRLNQAKE
TAVVSPSATPATALENPTLLSDSFAHDKNTSDLRKILAKPRGIPISEVSASSASIHSRES
DVNSALHETRQSSIPAQLVVRQPTSLPSSETKQVFNEKSVISVIASTATSVISRVCNPPE
SEEKPSLSMTNPFVDNQPPKQMYQTSMGEGSPYHGPPVGEEGGNAGRFIVESTSLSTGPT
AGLRVNTSEGVVVLSHSGQKIEGRQRISAKISQIPPPSAVDIESQQLVTMPQIKQEHYIG
SQRDVPKGPVPPTDHGHSLKSQTNVSIKHESGQDKLDXVPSGQSGVVKRLQQTPGPSQVM
SFHHSEYAMLMKHSKKAEGSEPINVENVKSPWVSTISPAISPHLPSTGGNHVTFIPGTPT
DRAPSHIQSKQEPHSPRKSGHPHTSFSKVSSPIGSSSPKGVSMVLPTGLPAMSQYVPSVH
HSEQSVIMPPHSTHGSLGRMSPHCVGQAISMGHLSQGDVRVNTPPLAVMNYGIHNDGIAS
SWPPGQQRPTSPQAVGNREMVLKVNPASARGHEASEEEAARRFHQALARPPATQLKPESL
PAEYRGSLHSGLPLERFNMQTRDMRMLIYHPQVERPAAELHQGHIAEAVPPTSTQTNITP
SLSPRAHLLQKSVSDKDSLKQSEIKRATPPPGKDGMLGIRGPLSAMPSPKRVPLITSGTV
PTFSEYSTMYTNLRTVHSQFPENSPLAISQPPRNITPSQGAQESEHNQAQTESQVEHVGH
QQINMVQLLTRYPIVWQGLLALKNETAAVQLHFVCGNKSLGLRSLPVPETGPPLRIVQRM
RLETQQLEGVARRMTGESEFCLLLAMPCGLNQEDVVTQTQVLKSAFINYLKAKLAAGIIN
VPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLINQISSISPHLMIVITSV
NT seq
9696 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctctgggtgggaaatttacccgaacatgtccgggaggag
aaaatagtcgaatattttaaacggtatggacgcgtggagagcgttaaagtcctccgtaag
cgaggttcagaaggcggcgtggcggcgtttgtggatttcgttgacattaaaagcgcccag
aaggctcataatgcggtcaataaaatgggcgaccgagaccttcgcactgactacaacgag
cctggctcggtgcccagctcggtccggggcctggacgacgccccgcagtctagcagtcac
accagggacgttgcgagtttctcgagagccgccgtgggtcccgtttatgggcccccggtg
tctcttcacaccagagagggacgctatgagcgcagattagacggcagttcagacagtcgg
gaacgagcgtacgagcacaatccatacggacaccatgagcgcagtggcactttcgatagg
ccgcggcattacaacacggactattacagagaccgtgccatttttgcctctggagtcggg
gccagccctacagttactgcaattggcggggggtttgagaccccggaatcacattttgaa
tctcgaatccgcgatccttttactttatctggttccgcacggcgagatccttaccgcgat
gacagggggcggcgagtggatcggacttaccatcatcgccggagtcgatcttctcattcc
tcccaatcgcggcacccttctccacaaaggaccacaggacagacccccaaagcctcccat
tccccaaaaagagcccctgtttctccaggcagaggtccacgttcacggtcccgaagcaga
tcatccagctctgattcggtcagcagcaccagcagtaccggaagcggcagcagtgactcc
aacagcagttctagcgagggttcccgagctcgctcagttcagtctgcagccacccaccca
cctccagctcctcctccactgtcactagactgtgatgaaccacgtaggagttttggcatc
agggtccagaacctccctgttcgatccacagacacaagtctgaaagacggtcttttccat
gagtttaagaagtatgggaaggtgacctcagtgcagatccatggagcttcagaggagaga
tatggcttggtgttcttcaggcagcaagaagaccaggagaaagctctcagcgtgtccaag
ggaaagctgttttttggtatgatgatagaagtgaccgcttggaacggacctgagaccgaa
agtgagaatgagttccgaccgctggacggacgcatcgacgagtttcatccaaaagcaacc
agaaccttgtttattggaaatttggagaaaacgactaactaccagcagttgcttgatgtt
ttccagcgttttggagagatagtggatatcgatattaaaagggttaacggagtcccgcag
tatgcctttgtgcagtactctgatatcgccagtgtgtgtaaagctattaagaaaatggat
ggagaatacctgggtgccaacagactcaagcttggttttgggaagagtatgcctacgacg
tgtgtatggttagacggtctgtcctccaacatcacagaacagtacattacacggcacttc
tgtcgctatggacacgtggtgaaggttgtgttcgacaggttgaaagggatggccctgatt
ctgtacaacaacacagattttgcgcaaacagccgtaagagagaccaaaggatggaagctt
ggcggtaacaaaatgaaggttgattttgctagtcaggagagtcaagtggcattttatcgc
tctatgcaggcatcagggcaggatatgcgtgacttctatgaaatccctgctgacagaagg
gacgaacgaagaccttcgtatcatgaattctcagcagagagggcatactatgagaacgtc
cgggcaccagggatctatcccgaagaccccaggcgagactatcctgctcggagtcgtgag
cgttacccggaactagaccattaccaaggtgaccattatgacccacgctatcacgaagac
cctcgtgaataccgagattacagagaccccttcgaacaggatataagaaagtatagctac
atccagcgggaacgtgagcgagaacgggaacgctttgaggctgaccgtagcaggtggagc
ccgtctcatccacgcaggcccataacccctactgcctctccttcaccgtctgaacgcatc
tccagggaagcggagcgacgcgtgtacaggcactcttctgagagaagtgggagctgtagc
tccttatctcctacgcctcagtttgaaaaggcagaggagtctccggtggattttaaacca
gagagtctggacagagaaggagcaactgaggctgaccgcttaagtgcggcggaaaagagc
aaacgcggaagacgcaaagagaaagcagacagagagaaaggcgagaaagcaaaatcgaga
aggggaaaagtacagtcgcctagcataccttatacggaagcagacagggagcccagcttg
gattcaaattctggaaaaactaaaggttctgatgttgagggttcagagagacagaggcac
aaagtggaaggtgaaccttccccttctgatctaatatctcgtttggagtcgcaaaaagag
aaactcgacatcgctaaagttgagtctgcggatagagataacaaaggccgatcaaagaaa
cacctcaaatcagaacttggaaccgaagggaaagattcccttttggattctgacaggctc
gcggcacgaaaaaggcgctttggagatcctgggagcaaagccagtaaacaaaagagaggt
cgccttgaggatgaacagaacgcggtggtcaatcaacctgcagattcgggggcgtctaat
ttaaaggaaggagaaagcgacgtgaaaacagaaaaagatgcacataaaagagagcattct
aaatccaaatcggagaggatgacgtctcattttagggacgagttagatcaccgatctgat
tcccaaaactcatctggacgacaagaagagcattccgatacgaacatggagacttctgac
tcgaaatctcagtctggaccaagcgttccaaggcgattttcaaacgatggaacaccagag
aaagacaccaaaggaagggaagagtatttggatatagatctttctcagagttatcgaaag
caaatggaacagaaccgaagacttcgccaacagcttcaagagtctgataaaccgggaaaa
actgatgctcctcagtgtgttgacgcagaagatttagaacaccgtagcttggtgcatgag
gtcggcaagccaccgcaggatgtcactgataactctcctccaagcaagagcaagaaacag
gatcacttggacgtggaagttggcaccaaaagagaacgggtgtatcggatattccggcca
aagagcgacgagtcggagtggagtgcaaactctccccatttcaatgcctctcaacatggc
gaggaagaatatacagatgtttcccaactagttaatgcgaaagaagtaaaagaacaacct
aaacaggaagacagttctcaccaggacatggagctaacggttaaacgtgtccacacttca
caggtccctaagctaagcacatctcttcatgatgagcagaaacgttgggaaagtcgcctg
aagcaggacttgttgcctgacttttcaaggagctcagaaaaaagacgcctcactcattcc
tatttggaatatagactctggcccgatttagagcctggtgaggtgcgctctgattctgaa
gaagatcgagaacacaaaccaaactctcccatgccctcaacctcaatctctttccctgaa
aggcatcgcggagacaggttatcggaatccaaactgaccggctcgctggagaggaacaag
ttttgttcatttgcacttgaccagaccattacaccagacactaaagcgctgctggaacgc
gcaaaatctttatcctcctcaagggaagacaactggtcttttctggacagcgattctcat
tttgccagtttcagaagcagaaaagatacagaaaaggtagagtcaactccgcgaccaact
ccttcctggtacatgaagaagaagaaaatacgaagcgagtctgaggataaactagatgac
cgtaaagaagatcctaaaccagaagaacaagaacggcgcgagctctttgcctctcgcttt
tttcacagttcaatctttgagcaagactcgaggcgtctccagcaccttgaaagaaagcat
gaagaccctgaacatggtatgtgctatccaggtaaccagcaaggccaaattgagggtcaa
cctgattctgagccagtggtcctcttccatgaccgctttttggagttgacaagactgcag
caacagaagggggggaaggagcagtctcaaccagagtccaagaaagaggaaggtgttgat
gtcagtgataaaacccaagaggaagtgcatcgtggtgctattgaacctgttgaaattaag
ccagctgagattaaaccagtcagccctgtacaagcccctcagtcaagccctgtgctaatc
ctgccaccctttcctgttcaagaaacccagaaatcaccacctagtgtaacaattaaggag
acgtcaccacagcctgaagtttgtaatgtcgacgcaccttctcctaaactttcagtgaaa
gaggaggaaaaccaatccgaacagccaatgagctcagtgacctttccactgcaacaagaa
ccttctgacttaaatcgatcagaatcccaagactcaaagcttttaatgaatgaaatcaaa
acaagtcctactgaagagctggaactgactagtgacagggatgatgagcggcgctctagt
agcgagaaaccgactaatgacactcaagtaagctatgaacccaaatctgaaccacatact
aagatccctgaattacagaattctccctctcctatgattatagacgagggtgaagtaaga
gtagagaaaccagagcctgtagccgtagaagttgaacctccagccaaagaaactgagtca
aaaggtgcagagagctatacagtagatgaaccgatctctccacctccaaggtccagaaac
aagaagggcaaagcctcacctacaacaccagtagcccctatgaccccatcaaacatacca
gacaaacaaagtactcgcaaaagtgaacgcatcgatagagaaaaacttaaacgttcctct
tctccaagagtggactcctcaaaagcaaatttcgatggcaagtcgaccggcaagtcgccc
atccatagtcctgacgccgaacaaagtgttgaacagaacaccccccctgtgagagcaaga
cgtcgaaatgtgcgttctgtttatgccaccccagtagatgatgaatctacacaacaaact
ggcaaggatgtggactcaccacgaggcggacgcaagcgtggtgtagacaaagatgcaagc
caacagcaatcagaaccagacagtcgtcggcgcgggcgtcctccgaagaatcggcgtcaa
ggagaggatttatcagccggaaagagtgaacgctcaaaattacctgaggccaaggagttt
gaaattggtgaaaccgcaaacagtgaaacggtcaaagtaggcaaaggtaaacattctcct
tacataaacaaagctgcgaatcaaggtaccgggtctggtttagcgaaaaaaggagaaaaa
actgataggctgtctggtgctataaatcctgctgagatggacgtggattctcaggatggc
agtggccaacatgatggcggtccttcagcaaacgagaaaaatgaggagcataaaccacaa
agcattttagaaatgaaacatgagaggatctctcaaacagagagcactactggaagccaa
aataaacttggggagtctgttcaggagcagtcgtctctggacaaaagcatgaaagcaaaa
actgctcggataacctgtagttcaaagctgatgactgaggataaatctctcgttctcaaa
aacctcacaatcaggcttgacatgactgaggtaaaggcgatgctgcaaaccggcgaggat
gaatctgggcatgacgactgtccgaaaaaggttgtgccaggtacatcgcccaaagagcca
atcccagagtctagattggagaatgagattttaggggaagatggaaatattaaggagtct
gcaacaccaccactccaggtcaaggatccccatgaagcattgttatcccaccagatggaa
ctagaacaagctgtggagaacattgccaagctcacagaagaacccgttcctcttcagttc
aaaaactcaaccgagtctcaagccccgttatctgaacttgtagaggggcgtgaggaagac
aagcctgccaatcctgctagtgaaacggaacttgctgccgccatcgattccattacatct
gaagacctgtcatgcggcttgccacaagaccaagtcatgagcactgtggtagacccagac
tcggatattcaaactctagtcccagatgccaaagttgttgaaggcagcaattcggccact
gtccaagaggacacttcaaacatggggacaccaagaaaagcaggtaaaggaagaccaaaa
gcccagaaaagagccaaaggccaaaaggctgctgtcaacaaaaaggaagctatcaaagaa
atggtagtggaacctgagggtctttcaattaagacttcagaaaccatgtctgcagcggca
tctgcagctgcagagattccccccgcagctgctgctcctgttattgcccccgtatcaaag
caagatagcagtgtaactgccatcatccctgaagttcctaaagtgattgagagtgctctt
aaagagcagcccgacttgccaaaatcatctaatccagcagcaagcaaaagcccaacatca
ctcaggcctaatccttatgagtgtacgtctccctcgatttctccaagtatttgtctcaaa
ccttcacatccaagtagactttcggtttctccaacagaccgattaaatcaggctaaagag
acggcagtagtttccccttcggccactcccgcaaccgcgttagagaacccaaccttgctg
tccgattcctttgctcatgataagaacacaagcgacctgcgcaaaattctcgcaaaaccg
aggggtattccgatttcagaggtcagtgcttcatctgcaagcatacattcgagggagagc
gacgtcaatagtgcgctacatgaaaccaggcaatcttctattccagctcagttagtagtt
cggcagccaacttcgttaccgtcttcggagactaagcaagtctttaatgagaagtctgtg
atttctgtgattgcctccactgctacttcggtcatcagtcgagtttgcaacccccctgaa
tctgaagagaaacccagtctttcgatgactaacccgtttgtggataatcagcccccaaaa
cagatgtaccagaccagcatgggggaaggtagcccttaccacgggccacctgtcggagag
gagggtggaaatgcaggtcgctttatagtggagagcacatccctgagtacaggccccact
gctggtctcagggtcaacacctctgagggtgttgtggtgctgagtcattctggacagaag
attgagggacgtcaacggattagtgccaaaatcagtcagattccaccacctagtgcagtg
gacattgaatctcagcagctggtaacgatgccacagatcaaacaggaacattatattgga
tcccaaagagatgtgccgaagggtcctgtacctccgacggatcacggtcattccctcaag
tcacagacgaatgtttctattaagcacgaatccggacaagacaaattagacnccgtaccc
tccgggcaaagcggggtggtaaaaagattacagcagacacctggtccgtcccaagtaatg
agtttccatcactcggaatacgcaatgctgatgaagcattcaaagaaagcagaaggaagc
gaacctattaatgtggaaaatgtgaaatctccctgggtctctactataagtcctgctata
agccctcaccttccctctacaggtggcaatcatgtcacgttcataccaggcacgcctaca
gatcgagccccttcacacattcaaagcaaacaggaaccccactcaccacggaaatctgga
cacccccacacttccttttccaaagtgtcttctcccattggctcgtcgtctcctaaaggc
gtgtccatggtcttgccaactggtttacctgcgatgtctcagtatgtccccagtgtgcat
cactcggaacagtccgtcatcatgcctcctcatagcacgcatggcagtctgggaagaatg
tcacctcactgtgtgggccaggccatttccatgggtcatctatctcagggtgatgttaga
gtcaacacacctccactagcggtcatgaactatggaattcacaatgatggcattgcttcg
tcttggccgcccggtcagcagcgccccacgtctcctcaggctgtggggaacagagagatg
gttctcaaagtcaacccagccagtgcaagaggtcatgaagcaagtgaggaggaggcggca
aggcgctttcatcaagctctcgcaagaccaccggcgactcaactcaaaccagagtcttta
ccagcagagtaccgtggctctcttcacagcggactgccattggagaggtttaacatgcaa
acaagagacatgcggatgcttatataccacccacaggtggagcgtcctgctgctgagctg
catcaggggcatatagcggaagccgtccctcccacctcgacccagaccaacattacgccg
tcgctttcacctcgggcacatcttttacagaaaagtgtttctgacaaagactccctgaag
cagtccgaaatcaagagggccacacccccccctgggaaagatggaatgctgggaatacgt
ggtcccttgtccgccatgccttctcctaagcgagtgccgctgatcacctctggaaccgtg
ccaacgttttcagagtattcaactatgtacaccaacctgcggacggttcactcacagttt
cctgaaaattcacctctggcaatcagccaacctcctcgcaacatcacgccatcacagggt
gctcaagaatccgagcacaaccaagctcagaccgagagtcaagtggagcatgttggacac
cagcaaatcaacatggtacagcttctcacgcggtatcctatcgtgtggcaaggcctgctg
gcgttgaaaaatgaaactgctgctgtccagttgcattttgtgtgcggaaacaagtctctc
ggcctgcgctcacttcccgtgccggagactggacctcctctgcgtatcgtccagagaatg
agattagaaacgcaacagcttgaaggagtcgctcgcagaatgaccggtgagagtgaattc
tgcctcctgctcgccatgccctgcggtctaaatcaggaagacgtcgtgactcagacacaa
gtgcttaaatcggcctttattaattacctgaaggccaaactggcagcaggaatcatcaat
gtccccaatcctggctccaatcagcccgcctacgtgctgcagatcttccctccgtgcgag
ttctcggagtctcacctttcacgccttgctcccgacctcatcaaccagatctccagcatt
tcacctcacctcatgatcgtcatcacgtctgtgtga
DBGET
integrated database retrieval system
