Shewanella mesophila: K0I73_07425
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Entry
K0I73_07425 CDS
T09171
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smes
Shewanella mesophila
Pathway
smes03030
DNA replication
smes03410
Base excision repair
smes03420
Nucleotide excision repair
smes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I73_07425 (ligA)
03410 Base excision repair
K0I73_07425 (ligA)
03420 Nucleotide excision repair
K0I73_07425 (ligA)
03430 Mismatch repair
K0I73_07425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smes03032
]
K0I73_07425 (ligA)
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_07425 (ligA)
Enzymes [BR:
smes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0I73_07425 (ligA)
DNA replication proteins [BR:
smes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0I73_07425 (ligA)
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0I73_07425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0I73_07425 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0I73_07425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0I73_07425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QYJ87518
LinkDB
All DBs
Position
1708471..1710480
Genome browser
AA seq
669 aa
AA seq
DB search
MQAIQQEIQQLTNEINQHNYRYYVDDAPSVPDAEYDRLMRRLQALEAQYPELALADSPTK
RVGGEALAKFEQVTHLKPMLSLDNVFSEEEFNAFHKRVSDKTTASPQFCCEPKLDGLAVS
ILYRDGQFERAATRGDGAVGEDITENVRTIKSIPLSLRGDNYPPLLEVRGEVFMPKAAFE
AVNDKARQKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPESWSLAPSHY
DQLMQLKSWGFPVSSEVKVCDNIPAVLAYYQDILERRAALAYEIDGVVLKVNDISQQKTL
GFVARAPRWATAYKFPAQEEITLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN
ADEIARLGVQIGDSVIIRRAGDVIPQIVAVVADKRPNDAQPILFPTACPVCGSDVERIEG
EAVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKVVEQMIDKELIESPADLFKVTAS
ALTMLERMGLKSANNLVAAIEDAKQTTFARFLYSLGIREVGEATAANLANYFKTLDRLIQ
ADAEDFIKVDDVGVIVAQHLVHFFAQPHNLEVVEGLINAGVHWPAIEEVAEEALSLKGQT
WVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCVVAGEAAGSKLTKAQELGVKVIDE
AQLLALLNG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctatacagcaagagatacaacaacttactaatgaaattaaccaacataactat
cgttattatgttgatgatgcgccatcggttccagatgccgagtacgatagattaatgcgc
cgtttgcaagcattagaagcccagtatcccgagctagcgttggccgactcgccaaccaag
agagtcggtggtgaggccttagctaaatttgaacaagtcactcacctcaagccaatgctg
agtttagataatgtctttagtgaagaggagtttaacgcttttcataaacgggttagtgat
aagaccaccgcatcgcctcagttttgctgcgaacctaagctcgatggtttagccgtgagt
attttatatcgtgatggtcagtttgagcgcgcggctactcggggggatggcgcggtaggt
gaagatattactgagaacgtgcgcaccataaaatcgatcccactgagcctgcgaggcgat
aattatccaccgttactcgaagttcgtggtgaagtgtttatgcctaaggcggcatttgag
gcggtcaatgataaagcccgccaaaagggtgaaaaattatttgttaatccgcgtaatgca
gcagcagggagtttgcgtcagctcgatagtaagatcaccgcgagccgttcgctggcattt
tatgcctatgcccttggcgtggtcgagccggagtcttggtcgttagctccaagccattat
gatcagttgatgcaactaaaaagttggggctttcccgtcagcagcgaggtgaaggtttgt
gacaatattcccgccgtactcgcatattatcaagatattctcgagcgcagagcagccctt
gcatatgaaatcgatggcgtcgtgctgaaagtaaatgatattagccagcagaaaacctta
ggttttgtcgccagagcaccgcgctgggcgaccgcctataagtttcctgcacaagaagag
ataacactgctagaaggggtcgattttcaggttgggcgtactggcgctgtgacgccagtt
gcccgtttaaaaccggtatttgttggtggtgtaaccgtctctaatgcgaccctacacaac
gccgatgagatagcgcgtcttggggtacaaattggtgacagcgtgatcattcgccgcgca
ggcgatgtaattccccaaattgttgccgtcgtagccgataaacgtcccaatgatgctcag
cctattctcttccctacggcttgtcctgtttgtggtagtgatgttgagcgtatcgaaggt
gaagccgtcgcgcgatgcagcggcggtctattttgtgaggctcaacgtaaagaggcgata
aaacattttgcttctcgcaaggcgctgaacatcgatggtatgggcgataaagttgtcgag
cagatgatcgacaaagagctaatcgaaagccccgccgatctgtttaaggtcaccgcgtct
gcactcaccatgttagagcgtatggggcttaaatcggctaacaatttggttgccgcgatt
gaagatgccaagcaaacgacctttgcgcgcttcttgtattcactggggatccgcgaagtg
ggtgaggcgaccgcagccaatttggcaaattactttaaaaccttagatagactgatacag
gccgatgccgaagactttatcaaggttgatgatgtaggtgtgattgttgcccagcattta
gtgcacttctttgcgcagccccataatcttgaagtggtcgagggtttgattaacgctgga
gtccattggccagctatcgaagaggtcgctgaagaggccctgtctcttaaaggccagact
tgggtattaactggcaccttaactcagctaaatcgtaatgatgccaaggcgcagttgcag
gccttaggcgccaaggtggcaggtagtgtatcgaaaaacaccgactgcgtggtggcaggt
gaggcagcagggtcaaaattgactaaggcgcaagaacttggcgttaaggttatcgatgaa
gcacaactattagcgcttctcaatggttaa
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