Streptomyces mirabilis: SMIR_10125
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Entry
SMIR_10125 CDS
T10322
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smib Streptomyces mirabilis
Pathway
smib03030
DNA replication
smib03410
Base excision repair
smib03420
Nucleotide excision repair
smib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMIR_10125 (ligA)
03410 Base excision repair
SMIR_10125 (ligA)
03420 Nucleotide excision repair
SMIR_10125 (ligA)
03430 Mismatch repair
SMIR_10125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smib03032
]
SMIR_10125 (ligA)
03400 DNA repair and recombination proteins [BR:
smib03400
]
SMIR_10125 (ligA)
Enzymes [BR:
smib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SMIR_10125 (ligA)
DNA replication proteins [BR:
smib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SMIR_10125 (ligA)
DNA repair and recombination proteins [BR:
smib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SMIR_10125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMIR_10125 (ligA)
MMR (mismatch excision repair)
DNA ligase
SMIR_10125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMIR_10125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QUW79431
LinkDB
All DBs
Position
complement(2349829..2352024)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKDAQPNSLPAEAREQHAQLAEQIEEHRFRYYVKDQPVVSDAEFDQLLRSLEALEER
YPELRTPDSPTQKVAGAYATEFTSVQHRSRMLSLDNAFSDLELAAWAERVAKDVGTSDHH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDHVPDLVE
IRGEVYFPMEKFEELNARLVEAGDKLFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGA
LEGFEGLTRLSEAYTLLHSWGLPTTRYAKVVDDLDGVREFIAYYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPAECP
ECGTPLRAMKEGDIDLRCPNGRTCPAQLRERVSYLAGRECLDIEHFGNVAAAALTRPLEP
AAPPLVDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LALLDNIAEAKSRPLARFINGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAAVDGVA
GIIATSVKQWFTEDWHREIIRKWKAAGVRLEDEGSGEDEGPRPLEGLTVVVTGTLEHHTR
DGAKEALQSRGGKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLEQGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaaggacgcacagcccaattccctgcccgccgaggcacgggagcagcac
gcccagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggaccagccg
gtcgtcagcgacgcggagttcgaccagttgctgcgctcgctggaggccctggaggagcgg
tatcccgagctgcgcacccccgactccccgacccagaaggtcgcgggcgcgtacgcgacc
gagttcacctccgtccagcaccgctcgcgcatgctctcgctggacaacgctttcagcgac
ctggagctcgcggcctgggccgagcgcgtcgccaaggacgtgggcacctcggaccaccac
ttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctgacctacgagcacggccgc
ctcacccgcgcggcgacccgcggcgacggccgcacgggcgaggacatcacgcccaatgtg
cgcacgatcgcggagattccggaccgcctcaagggcgaccacgtcccggacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcgaggagctcaacgcccgcctggtg
gaggccggcgacaagctcttcgccaacccgcgcaacgcggcggcgggttcgctgcggcag
aaggacccccgcgtcaccgcgagccgccccctgcacatggtggtccacggaatcggcgcc
ctggagggcttcgagggcctcacccggctctccgaggcgtacacactgctgcactcctgg
ggcctgccgaccacgcggtacgcgaaggtggtcgacgacctcgacggcgtacgggagttc
atcgcgtactacggcgagaaccggcactccgtggagcacgagatcgacggagtcgtcgtc
aagctcgacgagatccgtctccagggccgcctcggttccacggcccgcgctccacgctgg
gccatcgcctggaagtacgcgccggaagaggtcaacaccaagctggtcgacatcaaggtc
ggcgtcggccgaacagggcgcgtcactccgtacgcgcaggtcgagccggtcaccgtggcg
ggctcagaggtcgagttcgcgactctgcacaaccaggaggtcgtgaaggccaagggcgtc
ctcatcggggacacggtcgtgctgcgtaaggccggtgacgtcatcccggagatcctcgga
ccggtggtggatctccgcgacggcaccgagcgggagttcgtgatgccggccgagtgcccc
gagtgcgggacgccgctgcgcgccatgaaggaaggcgacatcgacctgcgctgccccaac
ggccgtacctgcccggcccagttgagagagcgcgtctcctacctcgcgggccgggagtgc
ctcgacatcgagcacttcggcaatgtggccgcggcggcgctgacccgtccgctggagccc
gccgccccaccgctcgtcgacgagggcgacctcttcgacctcacggtcgagcagctgctc
ccgatcaaggcgtacgtcctcgaccaggacagcggcctgcccaagcgggaccccaagacc
ggtgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacg
ctcgctctgctcgacaacatcgccgaggcgaagagccgcccgctcgcgcgcttcatcaac
ggactctccatcagacacgtcggcccggtggccgccgaggcgctggcccgcgagttccgt
tccatcgaccgcatcgagcaggccaccgaggaggaactcgccgcggtcgacggggtcgcc
gggatcatcgcgacctcggtcaagcagtggttcacggaggactggcaccgcgagatcatc
cgcaaatggaaggccgccggcgtccggttggaggacgagggttccggcgaggacgagggc
ccgcggcccctcgaaggactcaccgtcgtcgtcaccggcacgctcgaacaccacacgcgg
gacggcgcgaaggaggcccttcagagccggggagggaaggtgaccggttcggtctcgaag
aagacgtctttcgtggtcgtgggcgacaatccaggatctaagtacgacaaggcgatgcag
ctgaaggtgccggttctgaacgaggagggcttcgccgtcctgctcgaacagggaccggag
gccgccgcggaagtcgccctcccgaccggggagtag
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