Streptococcus milleri: NCTC11169_00829
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Entry
NCTC11169_00829 CDS
T09563
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smie
Streptococcus milleri
Pathway
smie03030
DNA replication
smie03410
Base excision repair
smie03420
Nucleotide excision repair
smie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11169_00829 (ligA)
03410 Base excision repair
NCTC11169_00829 (ligA)
03420 Nucleotide excision repair
NCTC11169_00829 (ligA)
03430 Mismatch repair
NCTC11169_00829 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smie03032
]
NCTC11169_00829 (ligA)
03400 DNA repair and recombination proteins [BR:
smie03400
]
NCTC11169_00829 (ligA)
Enzymes [BR:
smie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11169_00829 (ligA)
DNA replication proteins [BR:
smie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11169_00829 (ligA)
DNA repair and recombination proteins [BR:
smie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11169_00829 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11169_00829 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC11169_00829 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11169_00829 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Ribosomal_L33
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
VEE12399
LinkDB
All DBs
Position
1:843657..845603
Genome browser
AA seq
648 aa
AA seq
DB search
MLELVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQPDSPTHRVGGKVL
EGFEKYQHQYPLYSLQDAFSREELDAFDTRIRKDFPDVSYLCELKIDGLSISLMYEKGIL
VAGATRGDGSVGENITENLKRVKDIPLKLPSEVDMTVRGECYMPRSSFDAVNQLRQENGE
PEFANPRNAAAGTLRQLDTAIVAKRNLATFLYQEASPTSATSQEAVLNQLSKNGFSVNER
HILAHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLVVQEELGFTVKAPKWAIAYKFP
AEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKGDTVI
VYKAGDIIPAVLQVVESKRQSEEKLEIPKNCPSCNSELIHFEDEVALRCINPRCPAQIKE
GLIHFASRDAMNITGLGPAVVEKLFDQQLVNDVAGIYRLTVEDLLQLENFKEKSANKLYT
AIQTSKENSAEKLLFGLGIRHVGSKASQILLEHFHDLEQLAKAEKEGIAALDSLGMVIAE
SLSSYFAQEGTHILLSELKEAGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSEAKKK
LESLGAKVTSSVSKKTSLVVAGADAGSKLTKAQELGITIRDEAWLESL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttagaactggtgaagctgctcaatcagtatgctcatgaatattataccaccgataat
ccaagcgtatcggatagtgaatatgataagttgtatcatgaattattagatttagaaaag
cagtatccagagttcgttcagcctgatagcccaactcatcgtgtgggaggtaaggtttta
gaaggttttgaaaaataccaacaccagtatccgctctatagtttgcaggatgctttttca
cgtgaagagttagatgcatttgatacacggattcggaaagattttccagatgttagctat
ctatgtgaactaaaaattgacggcctctctatttctctcatgtatgaaaaggggatttta
gttgcaggagcgactcgcggagacggttctgtcggggaaaatatcacagaaaatttgaaa
agagtgaaagatattcctttaaagttgccaagcgaagttgatatgactgttcgtggtgaa
tgttatatgccacgcagttcttttgatgcggtgaatcagctacgtcaggaaaacggagaa
ccagaatttgctaatccgagaaatgcagcggcaggaacattgcgtcagttagatactgca
attgtagccaaacgtaatcttgcaacctttctctatcaagaagccagtccgacaagtgcg
acgagccaagaagctgttttaaatcagttatctaaaaatggcttcagtgtgaatgagcgg
catattttggcacattcgatggatgaagtgtggcagtttattggacaaatcgctcaagaa
cgcgaccagttaccgtatgatattgacggtgttgtaatcaaggtaaatgatttggttgtg
caggaagagctgggctttactgtaaaagcaccaaaatgggcgattgcttacaaatttcca
gctgaagaaaaagaagcgcagcttttatcagttgactggacagttggacggactggagtt
gttacgccaaccgccaacttgacgcctgtgcaattagcggggacaacggtcagccgagcc
actttacacaatgtggattacattgctgaaaaggacattcgcaaaggcgatacggtcatc
gtttacaaagcaggtgacatcattccagctgttttgcaagtggttgaaagtaagcgccaa
tcagaagagaaattggagattccaaagaattgtccaagttgcaacagcgagttgattcac
tttgaagatgaggttgctttacgctgtatcaatccacgttgtcctgcacaaatcaaagaa
ggcttgattcattttgctagtcgcgatgccatgaatatcacaggtcttggtcctgctgtt
gtagaaaagttatttgatcagcagttggtaaatgatgtggctggcatttatcgcttgact
gttgaagatttgctgcaattggaaaattttaaggaaaaatcagctaataagttgtatact
gctattcagacttctaaggaaaattctgccgagaaattattatttggcttgggcattcgc
catgttggaagtaaagctagtcagattttgctagagcattttcatgatttggagcaatta
gcaaaagcagaaaaagaaggaattgctgcgctggatagtctaggaatggtgattgctgag
agtctttctagctatttcgcacaagaaggaactcatattttattgtcggaattaaaagaa
gcggggttaaatttcacttaccttggcgaaaaagtggcagcagatgcagcactttctgga
ttgaccgttgttttaacaggaaaattggagcgtctcaatcgttcagaggcgaaaaagaaa
ttagaaagtttaggtgcaaaggtgacgagctcggtctctaagaaaacaagtctagtcgtt
gccggagcagatgcaggaagtaaattaacaaaagctcaagagttgggcataaccattcgt
gatgaagcttggcttgagagtttatag
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integrated database retrieval system
