Salvia miltiorrhiza (redroot sage): 130998860
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Entry
130998860 CDS
T09291
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
130998860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130998860
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
130998860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
130998860
NCBI-ProteinID:
XP_057780267
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All DBs
Position
8:49909860..49923368
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AA seq
979 aa
AA seq
DB search
MGVPAFYRWLADRYPLCIVDVVEEESGQDERGVPRPVDISRPNPNGIEFDNLYLDMNGII
HPCFHPEGKPAPATYADVFRHIFDYIDHVLSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAAAAEAEEEKLRKEFELEGEKLLPKGKTETSDSNVITPGTPFMAVLSVALQYYVQ
SRLNRIPGWHFLKVILSDANVPGEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGHQEKCFLCGQAGHLAAECRGGANGDSTKYADDTPIHKKKY
QFLNIWVLREYLGYELNIPNPPFEIDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAIN
LLMVVYRREFATMGGYLTDAGEVFLDRVETFVQAVAVHEDQIFKKRTRIQQAYENNEEMK
QRARGQASQNPNASAGDKVKLGEPGYKERYYSEKFGTSDPQKIDEIRKDVVLKFVEGLCW
VCRYYYQGVCSWQWYYPYHYAPFASDLQGLADLEITFFPGEPFKPFDQLLGTLPAASSTA
LPERYRRLMTDPASPILDFYPNDFEIDMNGKRFAWQGVAKLPFIDEKKLLAETKKLEDTL
TEEEQFRNSVMFDLLYVHPRHPLAAQITFYYRLSGIEKFPWPVDAAASAGMNGFLWLTKR
NGLKKVIPSPVYGLEDITDNQAINITYLNPAPHAHIPKPPVGVNMPQKIVKSFDIKPTPT
LWHEDNGGRHQLGKDRPQVYGAISGPILGEAAHRLVHNTLNIKPERTNPRNFHGNHVANR
MRPAGPPGYEMGFLETQYSPNRQASYRPRAAGPSGYGRSGYNEQGYYNDPNSFNVHYNPH
APMGSARYVGSPNNLQINRPIYNAQDRYSYQEQHHDLRGGMSALTIEGGSSKGRPLGGSS
RSSNSVQISHTTAQLSQHTGPLPSPPPKWISKRPADSTEMYSKQQTSIPAGQGGQVKMAH
RYQVKNKTAQNVVDSELQQ
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccggccttttaccggtggctggcggatcggtacccgctgtgtattgttgat
gtggtggaggaagaatctggacaggacgagaggggtgtgccccggcctgtcgacatatcg
aggccaaaccctaatggcattgagttcgataatttgtatttggatatgaatggtattatt
cacccttgtttccaccctgaaggcaagcctgcacctgccacttatgcggatgtatttaga
catatctttgattacattgaccacgttctgtcattggttcgtccaagaaagctcctttat
ttggcaattgatggtgtggctcccagggctaaaatgaaccagcaaaggtctcgtcgtttc
agggctgctaaggatgctgcagcagctgaagctgaagaagaaaagttgaggaaagagttt
gaacttgagggggaaaaactattgccaaaaggaaagacggaaacatctgattcaaatgtc
atcacccctggcaccccatttatggcagtgctctctgtagcccttcaatactatgtgcag
tcaaggttgaaccgcattcctggatggcactttctcaaggttattctttctgacgcaaat
gttcctggcgagggtgagcacaaaataatgtcttatattcgtttacagcgcaatattcct
ggttttgatccaaataccaggcactgtctatatggcttggatgctgacctgatcatgctc
tcattagctactcatgaagtccacttttcaatactgagggaggtgattactcttcctggg
caccaggaaaaatgctttctctgcggccaagcaggccatctggcagctgaatgtcgcggg
ggagccaacggtgatagtacgaagtatgcagatgacactcccattcataagaagaagtat
cagtttctcaacatctgggttttgcgagaatacttgggttatgagctgaatattccaaat
cctccatttgaaattgatttcgagagactggtggatgattttgtgtttttatgctttttt
gtcggcaatgactttcttcctcatatgcccacattggaaattagagagggcgccataaat
ttgctcatggttgtatatagaagggaattcgctacaatgggtggttatcttactgatgct
ggtgaggttttcttggaccgggttgaaacatttgttcaggcagttgctgtgcatgaagat
cagatttttaaaaaaagaacccgtatacagcaggcatatgagaataatgaagagatgaag
caaagagcaagggggcaggctagtcaaaatcctaatgcttcagcaggggacaaggtgaag
ttgggggagcctggatataaagaaaggtattattctgagaaattcggtacatctgatccg
cagaagattgatgaaatacgaaaagatgtggttttgaagttcgtggaagggttgtgttgg
gtttgccgctattattaccaaggtgtctgctcatggcaatggtactatccatatcattat
gctccatttgcatctgatcttcaaggcttagctgatttggagataaccttctttccgggg
gagccatttaaaccctttgatcagttattgggaactctaccagctgcaagttctactgct
ctccctgaaagatacaggaggttgatgactgatcctgcatcacctattcttgatttctat
ccaaatgattttgaaattgacatgaacggaaaacgcttcgcttggcagggtgttgccaaa
ttgccattcattgatgagaagaagttgcttgctgagaccaagaagcttgaggatacttta
acggaggaagaacaatttcggaatagtgtcatgttcgatttgttgtatgttcatcctcgt
cacccattggcagctcaaattaccttctactatcgtctctctggcattgagaaattccca
tggcctgttgatgctgctgcgagtgctggaatgaatggatttttgtggttaactaaaagg
aatggcttgaaaaaagttattccatcaccagtttatggtttggaagacatcactgacaat
caagccataaatatcacatatctcaatccagcgcctcatgctcacattccgaagcctcct
gtaggtgttaatatgccacaaaagatagtgaaatcttttgacataaaaccaaccccaaca
ttatggcatgaagacaacggtggaaggcaccagctaggcaaagatagaccacaggtttat
ggggcaatatctggtcctattttgggagaagctgctcatcgtctggttcacaacacattg
aacataaagccagagcgcacgaatcctcgcaatttccacgggaatcatgttgccaatagg
atgaggccagctggaccacctgggtatgaaatgggatttttagagacccaatattccccg
aatcgtcaggcatcttataggccaagagcagctgggccatctgggtatggtcgttctggt
tataacgaacagggatattataatgatccaaactcttttaatgtccactacaaccctcac
gctccgatgggaagtgctcgatacgttggctccccaaataacttgcaaatcaacaggcca
atttacaacgcacaagacagatattcatatcaagaacagcatcatgacctgagaggtggc
atgtctgcattaactatagaaggtggttcttccaaaggcagaccacttggtggatcttca
agatcatcaaattctgttcagatatcacacaccactgctcaactctcacagcacacaggt
ccgcttccatcaccgcctcctaaatggatcagtaaacgtccagccgattctacagaaatg
tattctaagcagcagacttcaataccagcagggcaagggggacaggtgaagatggctcac
cgctaccaggtcaaaaataagacggcgcagaatgtcgttgactcagaactccagcagtga
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