Salvia miltiorrhiza (redroot sage): 131000525
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Entry
131000525 CDS
T09291
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131000525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131000525
Spliceosome [BR:
smil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131000525
Complex C
U5 SnRNP specific factors
131000525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
MMR_HSR1
EFG_III
Roc
Septin
Ras
FeoB_N
SRPRB
TsaE
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
131000525
NCBI-ProteinID:
XP_057782465
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All DBs
Position
8:complement(7394625..7399541)
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AA seq
992 aa
AA seq
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MDDNLYDEFGNYIGPEIDSDRESDREEEEEELPDRTEDEEPMSDDERGPGKPNGWLTTTE
DVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVKNLKFELGVKDS
STYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFVDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAMPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLI
VDAGEGVLVNTERAIRHAIQDRIPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
ITAASSTAGNVQVIDPALGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRLWG
DYYYDPDTRSFKKKQPASGAERSFVQFVLEPLYKLYSQVIGEHKKSVEATLSELGVTLSN
AAYRLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAPRKVEHIYTGPKDSPIYEAM
ENCDASGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIIAGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLEYNEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGIV
SIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPEKQGPNILLDDTLSSEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLNRQSGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYAVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSAFDHWSIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKVQYS
PPIFLLISVGDASSLCLIAFECVEKNNNQICI
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatctttacgatgagtttggaaactatattggacctgaaatcgattccgat
cgggagagtgatagggaggaggaagaggaggaactgcctgaccggaccgaggatgaggag
cctatgtctgatgatgaacgtggccctggaaaaccaaatgggtggctaacaacgactgag
gatgttgatatggatggccaaattgtcctagccgaggacaaaaaatactacccaactgct
gaggaggtctatggcgaagaagttgaaactttagttatggatgaagatgagcagccactt
gaacagcctattattaagcctgtgaaaaatctgaagtttgagttgggggttaaggattca
tctacctatgtatcaacgcagttccttttgggtctcatgtcaaaccctatgctggtgagg
aatgttgctttagtcggccacctgcactgtgggaagacaactttcgtggacatgttggtc
gagcagacacatcacatatcaacctttgatcagaacagcgagaaacatatgaggtatact
gatacgaggatagatgagcaagagaggaggatatccatcaaggcaatgcctatgtcactt
gttctagaggatagcaattcgaaatcatatctttgcaatgttatggatacgcccggtcat
gttaacttttctgatgagatgacagctgctctgaggcttgctgatggtgcagtgttaatt
gttgatgctggagaaggagttctggtaaacacagaaagggcaattcgccatgcaatccag
gaccgcattcccattgtagttgtgataaacaaggttgacagattaataactgagctcaag
ttgcctccaaaggatgcctaccacaaactaaggcacacaattgaagtcatcaacaaccac
ataacagctgcatcttcaactgctggaaacgttcaagtcattgatcctgcccttggaaat
gtttgttttgcaagtgccagtgcaggatggtcatttactttgcaatcatttgctaagcta
tacgttaaactccatggtgttccatttgatgctaataaatttgcctctcgcctttggggc
gattattactacgatcctgataccagaagtttcaagaagaaacagcctgcaagtggagca
gaacggtcctttgttcagtttgtgcttgaacctctgtataaattatatagtcaagtgatt
ggagaacataaaaagagtgtagaggctacactttctgaactaggtgtgactttgagtaat
gcggcttatcgattgaatgttaggcctctgttaagattggcatgtagctctgtttttggt
agtgccacaggatttacggacatgttggttcaacacatcccatctgctaaagatgctgca
cctcggaaggttgagcacatctatactggtcctaaggactctccaatttacgaggccatg
gagaactgtgatgcatcaggtcctctaatggttaatgtaacaaaactgtatcctaaatca
gattgcagcgtctttgatgcctttggtagggtctacagtggggaaattatagctggccag
acagtacgtgtattgggagaagggtattctcctgatgatgaggaagacatgacagtgaaa
gaagtgaccaaattatgggtctaccaagctcgttataggattcccattagcaaagcccct
cctggttcttgggttctaattgaaggtgtagatgcttccattatgaagactgccacgctt
tgcaacttggaatataatgaagatgtgtatatatttaggcccctccagttcaacactctt
cctgtggtgaaaactgctacagagccattgaatcccagtgagttgccaaaaatggtggag
ggtcttaggaagatcagcaaaagctacccattagctatcacaaaggttgaagaatctggg
gagcatacaattttgggcactggggaattgtacttggattccataatgaaggacctcagg
gagctttattcagaagtggaagtaaaggtggcagatcctgttgtctcattctgtgaaaca
gttgtggagtcctcttcaatgaaatgctttgctgaaactccaaacaagaaaaataaaatt
acaatgattgcggagccactggagagaggacttgctgaggacattgaaaatggtattgta
agcattgactggccaaggaagaagcttggcgacttcttccagaccaagtatgactgggat
ttgcttgctgcgcggtctatttgggcttttggtcctgagaagcaggggcctaatattttg
ttggatgatacactgtctagtgaagttgacaagagtttgctcaatgcagttaaagattct
attgtgcaagggtttcagtggggagctcgagaaggccctctatgcgacgagccaatcaga
aatgttaaatttaaaattgtggatgccaaaattgctcctgagccattgaaccgtcaatct
ggccagatcattccaactgcccgacgtgtggcttattcagctttccttatggctacgcct
aggctcatggaaccagtgtattatgtggagatacaaactccaatagattgtgtttctgca
atatacgcggttttatcacgtaggcgtggtcatgtcactgctgatgttccacaaccaggg
accccagcctatattgttaaggcatttttaccggtgatagagtcgtttggttttgagacg
gacttgaggtatcatactcaagggcaggcattctgcttatcagcatttgatcactggtct
attgtccctggagatcctctggataaaagtatagttctacgtccgttggagccagcccca
atccaacatttggctcgtgaatttatggtgaagacgaggcgccgcaaggttcagtattct
ccacccattttcctcttaatttcggttggagatgcatcttctttgtgcttgatcgcattt
gaatgtgtggaaaaaaacaataaccagatatgtatttaa
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