Salvia miltiorrhiza (redroot sage): 131022088
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Entry
131022088 CDS
T09291
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor PIF3
KO
K12126
phytochrome-interacting factor 3
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04075
Plant hormone signal transduction
smil04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
131022088
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131022088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smil03000
]
131022088
Transcription factors [BR:
smil03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
131022088
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
131022088
NCBI-ProteinID:
XP_057807462
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Position
4:1371574..1377630
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AA seq
694 aa
AA seq
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MPLSEFLRMARGKLESGHQKPAPADISSRPGNELVELVWENGQVVMQGQSSRATRSPTLN
NLLSNTSKARDAATAARYGKFGGVDSIMNDMVPVVPSGDIDLGQDDEIAPWLSYPIDDAL
GQDYASEILPHISSVTAHGSSMQNSFVSADKRSSCEQAVNNSQSGASNVKVPSRSSSKDR
LFGSWLPQQLRQTSDALGSGVTDNSSDHLDSVFGNPGQSRDTVNGSASTVMDRRSIPPPA
NCSNFLNFSHFSRPAALAKGSLSNSDGIPMSVSSVVERVETKDKANCSNPVKSIRIEQVK
SMPKDNDSHGSCTLPVVGSREQVIKEPLERADNLFKETSIKNDKPLILSNNESSAKGAPD
GERIVEPMVASSSVGSGNSADRVSCEQTQHSKRKFCDIEESECRSDDVETESVDAKKATC
LRGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQ
VQIMSMSSGLCMPPPMMFPTGMQHMHPAHVPHFQPMGIGVGMGMAFGMGMPDMNGGSSGC
PMYPVPPLQVPHFSSPMLGLANFQRMPGHNHPVFGHPGQAFPNPVTKPPFVPLAPRPPVT
SAMGSSALRNGSNSEILSTSQIMKSGDPVTTTNSQSMCSAEARSSVHNKSNQPTKEVVDQ
CAAVQDNERATDAGSSAAHLSATTTDINKEPGCD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcctctttcagagtttttgagaatggctagaggaaaacttgaatctggccatcagaaa
ccggctccggccgatatctcatctaggcctgggaatgaactagttgaactagtttgggag
aatggccaggttgtgatgcaaggccagtccagtagggctacaagaagccctactcttaac
aatttattgtcgaacacgtctaaagctcgtgatgctgctaccgctgcaaggtatgggaaa
tttggtggagttgattctatcatgaatgatatggtgccagtggtaccctcaggggacatc
gatttaggtcaagatgatgagatcgctccgtggttaagttatcccattgatgatgctcta
gggcaagattatgcttccgagatcttacctcatatatctagtgtcacggctcatggatcg
tctatgcagaatagctttgtatcagcggacaagagaagtagttgcgaacaggccgttaat
aattcgcagagtggggctagtaatgtgaaggtcccttctagatcttcttctaaagatcgt
ctttttggttcatggctgcctcaacagcttcgccagacatcagacgccttaggatctggt
gtcactgataattcgagtgaccatctggattctgtattcggtaatccaggtcaaagtaga
gatacagttaatggctcagctagtacggtgatggataggcgtagtattccaccacctgct
aattgttcgaatttcctgaacttctcccatttctcaagaccagctgctcttgccaaagga
agcctctcaaactctgatgggattcctatgtcagtatcatcagttgtggagagggttgaa
actaaggataaagccaattgtagtaatccagtcaaatcgatacgcatcgagcaagttaaa
agcatgccaaaagacaacgactcccatggttcttgtacgcttcccgtggtaggttctaga
gagcaagtgattaaggaacctctggaaagagctgataatttattcaaagaaacttccatc
aagaacgacaagcctctgattctaagtaataacgaaagttcagcaaaaggagcccctgat
ggtgagaggattgttgagcctatggttgcttcttcttctgtgggatctggaaacagtgct
gatagagtttcttgcgaacaaacacaacattctaaaagaaaattctgtgatattgaggag
tccgaatgccggagtgatgatgttgaaactgaatctgttgatgccaagaaagcaacttgt
ctacgaggatctaagagaagccgagctgcagaagtgcataatctttctgaaaggagacgg
agagataggatcaatgagaagatgcgtgctttacaagaactcataccaaattgcaataag
gtggataaagcttcaatgctcgacgaagccattgaatatctaaagaccctccaactacaa
gtacagattatgtccatgagttcagggttatgtatgcctcctccgatgatgtttccgaca
ggaatgcaacacatgcatcctgctcatgttccacatttccaaccaatgggcattggagtg
ggtatgggtatggcatttgggatgggtatgccagacatgaatggtggatcctctggctgt
cctatgtatcccgttcctcccctacaagtaccgcacttttcttctccaatgctggggctc
gccaatttccagcgaatgcctggccataaccatccagtatttgggcatcctggtcaagca
tttcccaatccagtcacaaaaccaccgttcgttcctttagctccgcgccctcctgtaact
tctgccatgggatcaagtgctttgaggaatggaagtaacagtgaaattcttagtacatct
caaattatgaagtccggggatccagtgacgaccacgaattcacagtcaatgtgcagtgcg
gaagctaggagctcagtccacaacaaatccaatcagcctacaaaagaagtagtagatcaa
tgtgctgctgtgcaagataacgaacgggccacagatgcgggatcttctgcagctcatttg
tctgccaccactacggacattaacaaagaaccagggtgcgattag
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