KEGG   Salvia miltiorrhiza (redroot sage): 131026059
Entry
131026059         CDS       T09291                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131026059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smil03021]
    131026059
Enzymes [BR:smil01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     131026059
Transcription machinery [BR:smil03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     131026059
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 131026059
NCBI-ProteinID: XP_057811820
LinkDB
Position
1:complement(44041745..44058433)
AA seq 1435 aa
MDNELLEVQQVTSGRLKGIHLSILSDEDAGKISAMVIGTVNEVSDAALGLPTINATECIT
CGAKNLRDCEGHFGLINFPYTILNPYFMSEVAQTLNKICPGCKSLRHSKIKNAHSASSHQ
PRNCRYCTGKSKDGYPKMKFKVSSKDVFAKTAIIAEVSEALVSKSSQGCLASDYWDILPK
DSAQEHSTLPPNKRVLLPAQVYNILKDVSPRTLEDCFRRKNLIFLNSLLVTPNSYRVREF
GQRITVDETTKVYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSA
SSSSGLKNIKDLLLGKRTDHSFRMVVVGDPKVKVHEIGVPFHVAENVLINDHINEWNWEK
LMPCCDYMLHRRGHFSVLRNGQRITIWFKDMLRAGDSVCRPLIDGDIVLINRPPSIHQHS
LIALSVKVLPIDSVLSINPLICSPLRGDFDGDCLHGYVPQSINSRIELNELVSLKNQLVN
GQNGRNLLALGQDSLTAAYLFLQDGVILNKTEMQQLQMFCSCIPVSPAIIKSESGARFWT
GKQLFSLLLPPDFEFTSACNDVSIRHGKLVSSSHGSSWLNDSSGNLFQCLLRHCQDRVLE
FLSSGQEVLCEWLSMRGLTVSLSDLYLSQDSDSHKNLLEEISCGLREAERLSNASLLMVG
CNQDFLVDCSEESDYMENFLKERILIARQTVPELFQASVSAAKSVFRDMQSLAYKYSGSS
NSFIAMLKAGSKGNLQKLFQHSMCVGLQHSLAPLSFSVPRHLSCASWNHQKNLPDLQTSH
GYIPCTMIANSFSVGLNPHECFVLSLTTRDGSFGGNADIPGTLNRRLMFFLRDLVIGYDG
TVRSCYGNQVIQFHYCSEETDVIHAEGHMGGHPVGSIAACAITEALYSALDQPISVFEPS
PMLTLKKVLECGVKKSTGSKSASLFLSRRLKRWANGFEYGALEVKNHLECLPFSNIVSEV
RICYSKRTNSSTRISPWSCHFHINKEVALKRRLTLRSIMNALRLNNKLNGAKSKFDLPKL
HITSEVCSAADTHTESTICISAALTESIQNIPDVDILRDMVIPALLQTVVKGFLEFKKVD
ILWKEGPDRSKFPRCALGELFLRVVSSEYCEMTRFWSTLIDKCLFMRNIIDWERSHPDVL
LDYCEAYGIDVAWQYFVNNLHAAITDTGKSILPEHLVVTANCLSATGEFVPLNSRGLANQ
RKETNVYSPFSQACFLNPSDSFIKAAKVEQMDALKGSLEALAWGQTPSIGTGCQFDLLYK
GKGHEPAERADVYTLLSTHVASAKANAKVKQNGRKSIASYHFNSKGQKILLRKMLSQHFT
EVGIQKVSRKLKRILREYPANRHLIGEDKNTAMMALKFHPKLQDKSGTGILDIKVGRHPE
HNKNCFFLVRTDGTEEDFSYHKCIDHALEMITLDKTKTYQPKNNRVAQNPAVDVE
NT seq 4308 nt   +upstreamnt  +downstreamnt
atggataatgagttgcttgaagttcagcaagttacatcaggtcgtctgaaaggaattcat
ttaagtattttgtctgatgaagatgctgggaaaatatcagcaatggtcattggaacagtc
aatgaagtgtcggatgctgcattggggctccctacgataaatgctactgaatgcattacc
tgtggtgcaaaaaatttaagggactgtgaagggcattttgggttgatcaacttcccatat
acaatactaaatccttatttcatgtcggaagttgcacagacccttaataaaatctgccca
gggtgtaaatcccttcggcatagtaagattaagaacgcgcattctgcttcaagtcaccag
ccaagaaattgcagatattgtactgggaaatcaaaagatggctatccaaaaatgaaattc
aaagtatcttcaaaagatgtgttcgcaaaaactgcaattatcgcggaagttagtgaagca
ttggtgagtaagagctcccaaggatgtctggcttctgattattgggatatactccccaaa
gattcagctcaagaacacagtactctgccaccaaacaaaagagttctattgccagcacaa
gtgtataatattttaaaggatgtatctccaaggactttggaagattgcttcagaaggaaa
aacttgatctttctcaactcgttgctggtgactcctaatagttatcgagtgagagaattt
ggtcagcgcataactgttgatgagactacaaaggtgtacagaaagcttattgattttaga
ggcacaccgaacgaattaagtgctcgtgttctcgaacgttacaaactttccaagatacgc
tctgaaaagctgtcaaacttacagaaagtatatgagaaacaatcaacaaatgattcagct
tcaagttcatcagggctgaaaaacataaaagatttgctacttggaaagcggacggatcat
tctttccgcatggtggttgttggtgaccccaaagttaaggttcatgaaattggcgtgcca
tttcatgttgcagagaatgtgcttatcaacgaccatatcaatgaatggaactgggagaag
ctaatgccatgttgtgactatatgcttcaccgaagaggacacttctctgttcttcggaat
ggtcagaggattactatatggtttaaggacatgttgcgtgcgggagattccgtatgtagg
cctcttattgatggagatattgtgttgattaataggcccccatctattcatcagcactcc
cttattgctctgtctgtaaaagttctcccaatagattctgttctctccattaatcctcta
atatgttcccctctccgaggggactttgatggagattgtctccatggttacgttcctcaa
tccataaactccagaatagagctcaatgagcttgtttcattgaaaaatcagttagtcaat
ggacagaatggtcggaaccttttggcactaggtcaagatagtctgactgctgcatatctt
tttctccaagatggagttattctgaataaaactgagatgcagcagctgcaaatgttttgt
tcttgtataccagtgtcgcctgctattatcaagtctgaatctggagctcgtttctggact
gggaagcagttgtttagtcttcttttgcctccggattttgaattcacttctgcatgtaat
gatgtatctataaggcacgggaagcttgtctcatcttcccatggatcatcctggttaaac
gacagcagtgggaacctatttcaatgccttctaagacattgccaagatagagtacttgaa
ttcctgagtagtgggcaggaagttctttgtgagtggctgtcaatgaggggactcactgtc
tcgttatccgacctttacctgtcccaagattcagactcccacaagaatcttctggaagaa
atatcatgtggcctgcgggaagcagaaagactatccaatgccagtttgctgatggttggt
tgcaaccaagattttcttgtagattgctcggaagagagcgattacatggaaaactttctg
aaggagaggattttgatcgctcgacagactgtaccagaactttttcaggcttcagtttct
gcagccaagtcagtttttcgggacatgcaaagtctggcttacaagtactcgggcagtagt
aattcatttatagctatgctaaaggctgggagcaaaggcaatttgcaaaaactattccag
catagcatgtgtgtggggttgcagcactcgttggctccattatctttttcagttccccgc
cacctgtcttgtgcttcgtggaaccaccagaaaaatcttcctgatttacagacatcgcat
ggttacatcccgtgtacaatgattgccaactccttctcagttggtttaaatcctcatgag
tgttttgttctttcattgacaacccgtgatggttcttttggtggcaatgctgatatccct
ggcactctaaatcgacgcttaatgtttttcttgcgagatttagtaattggatatgatgga
accgtcagaagttgttacgggaatcaagttattcagtttcattattgctctgaggaaaca
gatgttatccatgctgagggccatatgggtggtcatcctgttgggtcaattgcggcttgt
gccattactgaagctttatacagtgctctggatcagcccatcagtgtctttgaaccatcg
cctatgttaactttaaagaaagtactcgaatgtggagtgaaaaagagtactggctctaaa
agtgcatcactgtttttatcccggcgacttaaaagatgggcaaatggttttgaatatgga
gctttagaagtgaagaatcatttggaatgtttgcctttctcaaacatagtctcagaagta
aggatatgctactccaagaggacaaatagcagcacccgtattagtccttggagttgccat
tttcacataaacaaggaagtcgccctcaagaggaggctgacattgcgctcaattatgaat
gctcttcgtttgaataataaattaaatggagcaaaatccaaatttgatcttccgaagtta
catataactagcgaggtttgttctgcagctgacactcatactgaatctacaatttgcata
tcagctgcattaactgagagcattcagaatatcccagatgtggacattcttcgtgatatg
gtcatacctgctcttcttcaaactgttgtaaaaggatttctggaattcaagaaggtcgat
atcttatggaaagagggacccgatcgttcaaaattccccagatgcgctttgggtgaactt
ttcttgcgagttgtctcgtcagaatactgtgagatgaccaggttctggagtacgctcata
gataaatgtctctttatgagaaatataattgactgggagcgcagtcatccagacgttctt
ctcgattattgtgaagcgtatggaattgatgttgcatggcagtattttgtaaataatttg
catgctgctataactgacactggcaagtccatccttccagaacatttagttgttacagcc
aattgcctttcagctacgggagagtttgtgccactaaattcaagaggactggcaaatcaa
agaaaggaaacaaatgtttattcacctttcagtcaagcctgctttttgaatcctagtgat
agttttataaaagctgccaaggtggaacaaatggatgctcttaaaggaagtcttgaggct
ttggcatggggacaaaccccttctattggaactggttgccagtttgatcttttatacaag
gggaagggacatgaacctgctgagcgcgcagatgtttacactctgctgagtacccatgtt
gcgtctgctaaagctaatgctaaggtgaaacaaaatggtagaaaatctattgcttcgtat
cacttcaactcaaaggggcaaaagattttgcttcggaaaatgctctctcaacatttcacc
gaagttgggattcagaaagtttcacggaaactaaagcgtatcctgagagagtatcctgca
aaccgtcaccttattggcgaagacaagaatacagcaatgatggctctaaagtttcatcca
aaattgcaagacaagtctggaactggtattttggacataaaggttggccgtcatccagag
cacaataaaaactgttttttcttggtacgtacagatggcaccgaggaagatttttcatat
cacaaatgcatcgatcatgctctggaaatgatcactctcgacaagacaaagacatatcaa
cccaagaacaacagagttgcccagaatcctgcagttgatgtggaatag

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