Sphaerotilus microaerophilus: CATMQ487_24230
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Entry
CATMQ487_24230 CDS
T10131
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smio Sphaerotilus microaerophilus
Pathway
smio03030
DNA replication
smio03410
Base excision repair
smio03420
Nucleotide excision repair
smio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CATMQ487_24230 (ligA)
03410 Base excision repair
CATMQ487_24230 (ligA)
03420 Nucleotide excision repair
CATMQ487_24230 (ligA)
03430 Mismatch repair
CATMQ487_24230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smio03032
]
CATMQ487_24230 (ligA)
03400 DNA repair and recombination proteins [BR:
smio03400
]
CATMQ487_24230 (ligA)
Enzymes [BR:
smio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CATMQ487_24230 (ligA)
DNA replication proteins [BR:
smio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CATMQ487_24230 (ligA)
DNA repair and recombination proteins [BR:
smio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CATMQ487_24230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CATMQ487_24230 (ligA)
MMR (mismatch excision repair)
DNA ligase
CATMQ487_24230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CATMQ487_24230 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BDI05453
UniProt:
A0ABN6PLN5
LinkDB
All DBs
Position
2827212..2829278
Genome browser
AA seq
688 aa
AA seq
DB search
MARAATLRATLNHHAHQYYVLDAPTLPDAEYDRLFQELQALEAAHPELRAADSPTQRVGG
AVLDGFTPVRHAVPMLSIRTETDTTAGGAQAFDARVRRELELGEVGEGAPPVEYAVELKF
DGLAINLRYERGVLVQAATRGDGETGEDVSQNIRTVRQIPLRLAGCEAPVLEVRGEVYMR
RDDFERLNERQREKDGKTFINPRNTAAGAIRQLDPAGLADKRLSFFAYGLGEVQGWDLPQ
THSGVLDALVGFGLPVCAERAVVAGADGLVAFHQRVAALRDSLPFDIDGVVYKVNSLALQ
QRLGFVTREPRWAVAHKYPAQEQMTRLLGIDIQVGRTGKLTPVAKLEPVFVGGTTVSNAT
LHNEDEARRKDVRIGDTVIVRRAGDVIPEVVGVVPPAEGNGGGEAAPARGEEFNLYQRLG
GQCPVCGSTIVREEGEVDWRCSGGLYCPAQRKQALLHFASRRMMDIEGLGDKLVDQLVDA
GIIRTLPELYKLGVAKLTALDRMGEKSAANLVAALERSKQTTLARFLFSLGIRQVGEATA
KDLARHFGRLDALMDASEEQLLQVRDVGPIVARSIRTFFDQPHNREVVEQLRAAGVTWEE
HDGAVADESPKPLAGRTLVLTGTLPTLGREEAKALIEAAGGKVSGSVSKKTHYVVAGEEA
GSKLDRARELGVAVLDEAGLRELLGGAG
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgagccgccacgctgcgcgcgacgctgaaccaccacgcccaccagtactacgtg
ctcgacgcgcccaccctgccggacgccgagtacgaccggctgttccaggaacttcaggcg
ctggaagcggcacatcccgaattgcgcgcggccgattcgcccacccagcgcgtcggcggc
gcggtgctggacggcttcacgccggtgcggcatgcggtgccgatgctgtcgatccgcacg
gagaccgacaccaccgccggtggcgcccaggccttcgatgcccgggtgcggcgcgagctg
gagctgggcgaggtgggcgaaggcgccccgccggtcgagtacgcggtggagctgaagttc
gacggcctggcgatcaacttgcgttacgagcgcggcgtgctggtgcaggctgccacccgc
ggtgatggcgaaacgggcgaggacgtcagccagaacatccgcaccgtccgccagatcccc
cttcggctggcgggctgcgaggcgccggtgctggaggtgcgcggtgaggtctacatgcgc
cgcgacgacttcgagcgcctcaacgaacgtcagcgcgagaaggacggcaagaccttcatc
aacccgcgcaacacggccgcgggggcgatccgccagctcgatccggcgggcctggccgac
aagcggctgagtttcttcgcctacggcctgggcgaagtgcagggctgggacttgccgcag
acgcactcgggcgtgctggacgcgctggtcggcttcggcctgccagtctgcgccgagcgg
gcggtggtggccggtgccgacggtctggtggccttccaccagcgcgtggcggcgctgcgc
gacagcctgcccttcgacatcgacggcgtggtctacaaggtcaacagcctggcactgcag
cagcgcctgggcttcgtcacccgcgagccgcggtgggcggtggcgcacaagtacccggcg
caggagcagatgacgcggctgctgggcatcgacatccaggtcgggcgcaccggcaagctc
accccggtggccaagctggagccggtgttcgtgggcggcaccacggtcagcaacgccacg
ctgcacaacgaggacgaggcgcgccgcaaggacgtgcgcatcggcgacacggtgatcgtg
cgccgcgcgggcgacgtgatccccgaagtcgtcggtgtcgtcccgccggccgagggcaat
ggcgggggcgaggccgcgcccgcacgaggcgaggaattcaacctctaccagcgcctgggc
ggccagtgcccggtgtgtggcagcaccatcgtccgcgaggagggcgaggtggactggcgc
tgcagcggtgggctgtattgcccggcgcaacgcaagcaggccctgctgcacttcgccagc
cggcggatgatggacatcgagggcctgggcgacaagctggtcgaccagctggtggacgcg
ggcatcatccgcacgctgcccgagctctacaagctcggcgtggccaagctcaccgcgctg
gaccgcatgggcgagaagagcgctgccaacctggtcgcggcgctggagcggagcaagcag
accacgctggcgcgcttcctgttctcgctgggcatccgccaggtcggcgaggccaccgcc
aaggacctggcgcggcacttcggccgtctggatgcgctgatggatgcgagcgaggagcaa
ctgctgcaggtgcgcgacgtcggccccatcgtggcgcgcagcatccgcactttcttcgac
cagccgcacaaccgcgaggtggtcgaacagctgcgcgcggcgggcgtgacctgggaggaa
cacgacggcgccgtggccgacgagtcccccaagccgctggctggcaggaccctggtgctc
accggcacgctgcccacgctgggccgcgaggaggccaaggcactgatcgaggccgcaggc
ggcaaggtcagcggctcggtgtccaagaagacgcactacgtcgtcgccggcgaggaggcc
ggcagcaagctcgaccgtgcccgcgaactgggcgtggcggtgctggacgaggcgggactg
cgggagttgctgggcggggcgggctga
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