Salegentibacter mishustinae: LDL76_17330
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Entry
LDL76_17330 CDS
T07820
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smis
Salegentibacter mishustinae
Pathway
smis03030
DNA replication
smis03410
Base excision repair
smis03420
Nucleotide excision repair
smis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL76_17330 (ligA)
03410 Base excision repair
LDL76_17330 (ligA)
03420 Nucleotide excision repair
LDL76_17330 (ligA)
03430 Mismatch repair
LDL76_17330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smis03032
]
LDL76_17330 (ligA)
03400 DNA repair and recombination proteins [BR:
smis03400
]
LDL76_17330 (ligA)
Enzymes [BR:
smis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LDL76_17330 (ligA)
DNA replication proteins [BR:
smis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LDL76_17330 (ligA)
DNA repair and recombination proteins [BR:
smis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LDL76_17330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LDL76_17330 (ligA)
MMR (mismatch excision repair)
DNA ligase
LDL76_17330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDL76_17330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Mig-14
HHH
DED
PADR1_N
5_3_exonuc
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UBZ07108
LinkDB
All DBs
Position
complement(3797583..3799577)
Genome browser
AA seq
664 aa
AA seq
DB search
MSTEEKIKQLREELHRHNYLYYIEDRPEISDYDFDMKLKELQELEEKNPEFDDPNSPTRR
VGGAITKNFETVVHDYRMYSLSNSYSKEELEDWEKRIEKSIGGKVQYVCELKYDGASISL
TYEDGKLKRAVTRGDGFQGDDVTNNIKTIKSVPLKLKGEFPQKFDIRGEIVLPYEGFAKM
NAERVEAGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYSLVADSLPVKSQFEGLEKA
RDWGFKVPPEAELKNSIAEVLDYVNYWDQHRHDLPYETDGVVVKVNSFDQQDELGYTAKS
PRWAMAYKFKAEQESTKLNKITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIEK
LDVREGDTVFVEKGGEIIPKIVGVDFTKRDPETPETKYAETCPVCDSELIRKEGEAQHYC
PNYNGCPPQIIGRIQHFISRKAMDIEGLGGETVALLVNANLITNYADLYTLKKEDVLPLE
RMAEKSAENLISGIEKSKEIPFERVLFALGIRYVGETVAKKLAKHYKNIDALASASTEDL
TAVDEIGERIAESVTDFFASEENRKIVQRLKDYGLQLEIAAEELENQSDLLEGNTFVISG
VFEKVSRNELKKMIEDNGGKVSGSISGKTDYLVAGENMGPSKLAKAEKLGTKIVSEDEFL
KMLD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgaagaaaagatcaagcaattacgcgaagaattacaccgccataattattta
tattatatagaagatagacccgagatcagcgattacgattttgatatgaagctgaaagaa
ttgcaggaactggaagaaaaaaatcctgaatttgatgatcctaattctcccacgcgtcgt
gtaggtggagcgataactaaaaattttgagaccgtagttcacgattatagaatgtattcg
ctttccaattcctactctaaagaagagttggaagactgggaaaagcgaatcgaaaaatct
attggtggtaaagtacagtatgtttgcgaattaaaatacgatggcgcttctattagtctc
acttatgaagatggtaaattaaaacgcgcggttacccgtggggatggttttcagggagat
gatgtgactaataatataaaaaccataaaatctgttcctttaaaactgaagggcgaattt
ccgcagaaatttgatattcggggagaaattgttttgccttacgaaggttttgcaaaaatg
aatgccgaaagggtagaggccggcgaagaaccttacgctaatccaagaaataccgcttct
ggaagtttaaaactccaagatagtgcagaggtcgcgaaaaggcctttagattgcctgctc
tatagtttggtggctgatagtttaccggtaaagtcgcaatttgaaggtctggaaaaagcc
agggattggggttttaaagttccgcctgaagccgagttaaaaaatagtattgcagaagtg
ttggattatgtaaactactgggaccagcaccgccacgatttaccttacgaaaccgatggg
gtagtggtgaaagtaaatagttttgaccaacaggatgaattggggtataccgctaaatcc
ccgcgctgggcaatggcttataaatttaaggctgaacaggaaagcactaagctaaataag
attacttaccaggttgggagaacaggagcaatcactccggttgccaatcttgagccggta
caattagccggaaccacggtgaaacgggcttctttacacaatgccgaccagattgagaaa
ctggatgtacgcgaaggagataccgtttttgtagaaaaaggcggtgaaattattcctaag
atcgtaggggttgattttaccaaaagggatccggaaactcccgaaaccaaatatgccgaa
acctgccctgtatgcgatagcgaattaattagaaaagaaggggaagctcagcattattgt
cctaattataatggttgtccgccgcaaataataggaagaatccagcattttatttctcga
aaagcaatggatattgaaggcctgggtggtgaaaccgttgctttgttggtgaatgctaat
ttaatcaccaattatgccgatctatataccctgaaaaaagaagatgttcttccgctggaa
cgaatggcagagaaatcggctgaaaacctgattagtggaattgaaaaatctaaagaaatt
ccttttgaacgggttttattcgcccttgggataagatatgtgggcgaaaccgtagctaaa
aaactggcaaaacattacaaaaatatagatgccctggcttcggcttcaaccgaagatctt
acggcggttgatgaaataggagaacgcatcgccgaaagtgtaaccgatttttttgcttcc
gaagaaaacaggaagatcgttcagcgtttaaaagactacggactccaattggaaattgct
gccgaagaactggaaaaccagagcgatttacttgagggaaatacttttgtgatttccggg
gtttttgaaaaagtttccaggaacgaactcaaaaaaatgatagaagataatggcggaaaa
gtttccggctctatttcaggaaaaaccgattatctggttgcaggcgaaaatatgggacca
agcaaactggcaaaagccgaaaaactgggaactaaaattgtgagcgaagacgagttcctt
aaaatgcttgattaa
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integrated database retrieval system
