Stenotrophomonas maltophilia K279a: Smlt3142
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Entry
Smlt3142 CDS
T00718
Symbol
ligA
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sml
Stenotrophomonas maltophilia K279a
Pathway
sml03030
DNA replication
sml03410
Base excision repair
sml03420
Nucleotide excision repair
sml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Smlt3142 (ligA)
03410 Base excision repair
Smlt3142 (ligA)
03420 Nucleotide excision repair
Smlt3142 (ligA)
03430 Mismatch repair
Smlt3142 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sml03032
]
Smlt3142 (ligA)
03400 DNA repair and recombination proteins [BR:
sml03400
]
Smlt3142 (ligA)
Enzymes [BR:
sml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Smlt3142 (ligA)
DNA replication proteins [BR:
sml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Smlt3142 (ligA)
DNA repair and recombination proteins [BR:
sml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Smlt3142 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Smlt3142 (ligA)
MMR (mismatch excision repair)
DNA ligase
Smlt3142 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Smlt3142 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
CAQ46587
UniProt:
B2FKJ1
LinkDB
All DBs
Position
complement(3179818..3182283)
Genome browser
AA seq
821 aa
AA seq
DB search
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT
QQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLRFSAEPKMDGLA
ISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARAD
FEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHS
GTLAQLGAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDDRAGQQAM
GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHN
ADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEG
AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLSRD
TLLHLKLVLDAEEPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALAQPASFEW
NTKKIATKWADNLIAAIDASRAATLERVLFALGIEHVGESTAKALAQWFGDLELIRHLPW
PLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRIADVHAPSAKLREGLDLAQL
LVESEIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLAEWLDADGHGAM
LLAAENAMREILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV
SKKTSFVVAGTEAGSKLDKAQSLGVSVWDEDRLLAYLAEHE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagccccgccgaacgcgccgaagaccttcgccggcagatcgcccaggccaac
cgcgcctatcacgagctggacgcgccggagatccccgacgtcgactacgaccggatggtg
cgcgagctggaagcgctggagcgcgagcacccggaactggcccgtgccgacagcccgacc
cagcaggtcggtgcgcgcccctctggccgcttcccggaagtgcgccacgcggtaccgatg
ttgtcgctgtccaatgccttcagcgacgaggaagtggccgatttcgtgcgtcgcatcgat
gagcgcctggggcgtcgcagcctgcggttctcggccgagccgaagatggacggcctggcg
atcagcctgcgctacgaggatggtcatttcgtgcttggcgcgacccgtggcgatggcagt
accggcgaggacgtgaccgccaacctgcgcgaaatcggtgacattcccaagcgcctgcac
ggcaaggactggccggatgtgctggaggtgcgcggcgaggtctacatggcccgcgccgac
ttcgaggcctacaacgaacgtgcgcgcctgcagggcggcaaggtgctggccaatccgcgc
aacgcggcggccggttcgctgcgccagctcgacccgaagatcagtgcgcagcgcaggctg
agtttcttcgcctacggcaccggcgaagtgcagggcggcgagctgccggacacccattcg
ggcaccctggcccagctcggcgcctggggcttcccggtcagtgagctgtgcaaagtggtg
gagggcaccgacggcctgctcggttactaccgcactatcggtgaacgccgcgacggcctg
ccgtttgatatcgatggcgtggtctacaagctggatgaccgggcgggtcagcaggcgatg
ggcttcgtctcccgtgcgccgcgctgggccatcgcgcacaagttccctgcgcaggaacag
agcaccacggtggaggcgatcgagatccagatcggccgcaccggtgctgccacgccggtc
gcgcgactggcgccggtggctgtggctggcgtgatcgtgtccaacgccaccctgcacaac
gccgaccagatcgcgcgcctcgatgtgcgcgttggcgacagcgtgatcgtgcgccgcgct
ggcgacgtgattcccgaggtggtcagcgtcattctcgaccgccgcccgcagggcaccacg
ccgtggcagatgccgacgcgctgcccggtgtgcggctcggagatcgtgcgtgaggagggg
gcggcggcgtggcgttgttcgggcgaactgtcctgcccggcgcagcgcaaggaagccatt
gcccatttcgcctcgcgccgcgccatggacatcgatggtctcggcgacaagtacatcgaa
accctggtcgacgcgggcatcgtcaagagcgtggccgacctgtaccggctcagccgcgat
acgctgctgcacctgaagctggtgctggacgccgaggagccgtcggcgctggcagcggcg
ctgaagctgcaccttcccgccgagggcagtggtgcggtgctcaatgcagtgctcaagctg
gacggcaacgatccgggctggcgcgcgcaggcgctggcgcagccggccagcttcgaatgg
aacacgaagaagatcgccaccaagtgggccgacaacctgatcgcagcgatcgacgccagc
cgtgcggccacgctggagcgcgtgctgttcgcgcttggcatcgagcacgtgggcgagagc
acggccaaggcgctggcgcagtggttcggtgacctggagctgatccgccacctgccgtgg
ccgctgttcaagcgtgtgccggacatcggtggcgaagtggcgcgttcgcttggccacttc
ttcgagcagcagggcaaccagcaggccatcgatgacctgctgcaggtcggccaggtgcgc
atcgccgatgtgcatgcgcccagtgccaagctgcgcgaagggctggatctggcgcagttg
ctggtcgagtcggagatccccggcatcacccgcctgcgcgccgaaaagctggtggctgcg
cttcccggcgcacaggcggtgctcgacgccgagcatggccagttcgtcaacgccggtctg
cccgatgacaccgcgcgcggtctggccgaatggctggacgctgatggccacggtgcgatg
ctgttggccgccgagaacgcgatgcgggagatcctggccaaggcgccggcgctggccgag
atcgtggcgggtccgctggatgggcagaccgtggtgctgaccggcaccctggcccagctc
acccgcgatgccgccaaggaacgcctggaagcgctgggtgccaaggtctccggcagtgtg
tcgaagaagaccagcttcgtggtggccggtaccgaggccggctccaagctggacaaggca
cagtcgctgggcgtgtcggtgtgggatgaggaccgcctgctggcctatcttgctgaacac
gaatga
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