Streptococcus macedonicus: SMA_0717
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Entry
SMA_0717 CDS
T01674
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smn
Streptococcus macedonicus
Pathway
smn03030
DNA replication
smn03410
Base excision repair
smn03420
Nucleotide excision repair
smn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMA_0717 (ligA)
03410 Base excision repair
SMA_0717 (ligA)
03420 Nucleotide excision repair
SMA_0717 (ligA)
03430 Mismatch repair
SMA_0717 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smn03032
]
SMA_0717 (ligA)
03400 DNA repair and recombination proteins [BR:
smn03400
]
SMA_0717 (ligA)
Enzymes [BR:
smn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SMA_0717 (ligA)
DNA replication proteins [BR:
smn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SMA_0717 (ligA)
DNA repair and recombination proteins [BR:
smn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SMA_0717 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMA_0717 (ligA)
MMR (mismatch excision repair)
DNA ligase
SMA_0717 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMA_0717 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RTT107_BRCT_5
SpmSyn_N
RNA_ligase
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
CCF02008
LinkDB
All DBs
Position
713912..715870
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG
GLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKAEFPNASYIAELKIDGLSISLVYV
DGVLQVGATRGDGLVGENITENVKRIKDIPHKLAQPLNITVRGEAYLPKASFDKINEERR
DSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTSMTTQNDVLEELSRYGFS
VNPRRITTSSMADIWKFIQEVAAERDSLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLNVVDSKRDKQVPMPIPESCPSCGSELIHYEDEVALRCINPLCPS
QIQERLTHFASRDAMNITGLGPSIVKKLFKAELVHDVADIYQLTVEDLLSLDGFKEKSAE
KLYNAIQLSKENSADKLLFGLGIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGT
VIANSLRSYFAKKEATELLHELKNAGVNFTYLGKKVSKDAQLAGLTVVLTGKLERLTRNE
AKEKLQNLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgtattcaagaattggttgatgagctcaaccagtaccgaaaagagtattac
acagaggaccaaccaacggtctcagatagcgaatatgacaagctttatcgcgagttagtc
gagcttgaaaaagctcatccagagttgattttgccaaatagtccaacgcaagaagtgggt
ggacttgttttagatggttttgaaaaatatcagcatgaaacaccgctttatagcctgcaa
gatgctttttcacgtgaggaattagaggattttgaccgtcgtgtgaaagctgaatttccc
aatgcctcttatatagcagagctgaaaattgatggtttgtcaatttcactagtttatgtt
gatggtgtgttgcaagtcggtgccactcgtggtgacggcttagttggtgaaaatatcact
gaaaatgtcaaacgtatcaaggacattcctcataaattggcacagccacttaacattaca
gttcgtggtgaagcttatttgccaaaggcgtcatttgataaaatcaatgaggaacgtcgt
gatagtggtcagacagaatttgcgaatccgagaaatgcggctgcagggacattacgtcag
ttaaatacagtagttgttgctaagcgaaatttggcaacatttctttatcaagaagtggca
tcaactagcatgacaacgcaaaatgatgttttggaggaattgtctcgctacggtttttcg
gttaatccgcgacgtatcacgacatcttcgatggcagacatctggaaatttattcaagaa
gtagccgctgagcgtgatagtttaccatacgatattgacggtattgttattaaggtcaat
agtcttgctatgcaagaagaacttggctttacggtcaaggcgcctcgttgggcaattgct
tataaattcccggctgaggaaaaagaagcagaaattctttcggttgattggactgttgga
cgtactggggtggtgacaccaaccgctaatcttagccctgttcagttagcaggaacaacg
gttagccgtgcgactttgcataatgtggattacattgctgaaaaagatattcgcattggc
gatacggttatcgtctataaggcgggagatattattccagcggtgctgaatgttgttgat
agcaaacgtgataagcaagtaccaatgccgattcctgaaagctgtccgtcttgtggcagt
gaactgattcattatgaagatgaggtggctttacgttgtattaatccgctttgtccaagt
caaattcaagagcgtttaacgcattttgctagccgcgatgccatgaatatcacaggttta
ggaccttctattgttaagaaacttttcaaagcagaattggttcatgatgtcgcagacatt
taccaattaacggtggaagatttgctaagcttggatggctttaaggaaaaatctgctgaa
aaactttacaatgccattcagctttctaaggaaaattcagctgataaattgctttttgga
ctgggaattcgtcatgtcggtgccaaggctagtcgtcaattgttggaagtctttgaaaca
attgatcagttggttgctgcggatgctgacagcattgctagcattgacggtttgggaaca
gttattgctaactcattgcgcagctattttgccaaaaaagaagcgacagagctcttgcat
gaattgaaaaatgcaggtgtcaactttacttacctaggtaaaaaagtttcaaaagatgct
caattagcaggtttaacagttgttttgactggaaaattggaacgtttaacgcgaaacgaa
gcaaaagaaaaattgcaaaatttaggagcaaaggtgaccaacagcgtgtccaaaaagacg
gacattgttgtcgcaggtacagatgcaggttcaaaattgaccaaggcccaagctttagga
attgatgttcgcgatgaagcttggctagaaagtttataa
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