Selaginella moellendorffii: SELMODRAFT_100336
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Entry
SELMODRAFT_100336 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_100336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_100336
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SELMODRAFT_100336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_25
AAA_28
AAA
Arf
Motif
Other DBs
NCBI-GeneID:
9657062
NCBI-ProteinID:
XP_002973934
JGI:
100336
UniProt:
D8RSM5
LinkDB
All DBs
Position
Unknown
AA seq
333 aa
AA seq
DB search
MAVTVEVKELCFTYPGIDGNAAPGAKPLVQGFSLTLRAGDRCLLIGANGAGKTTVLKIIG
GKHFVHPDMVRVLGKSAFHDTSITCSGDLSYLGGEWRRDVAFAGFDVPIQMDISAGKMIL
GVAGTDEERRKKLIQVLDIDLNWRMHKVSDGQRRRVQICMGLLKPFKATSSVSFPLFQVL
LLDEITVDLDVLARSDLLAFLKSECLDRGATIIYATHIFDGLESWPSHIAYLASGRLQIM
KPLHEIPELKELSLMRTVEKWLRKETNEQRKARKLRLEQGLPEFEDRIEGSRVIGGREKA
LPLNNGWIEGRMTSSLAGQEDPFNLSSNRVLRL
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggctgtaactgtggaggtgaaggagctctgcttcacgtacccggggatcgatggaaat
gccgcaccaggagcaaagccgcttgtccagggattttccctcacgctgcgagccggggat
cgatgcttgctcatcggcgccaatggggcagggaagactactgtgctcaagattatcggt
ggcaagcacttcgtgcatccggatatggtgcgcgtcctcggcaaatcggccttccacgat
acctccatcacttgctctggcgatctatcgtaccttggcggggagtggaggcgagatgtc
gcgtttgcgggattcgatgtaccaatccaaatggacatctccgcgggaaagatgattctg
ggagtagctggtaccgacgaagagcgtcgaaagaagttgattcaggttctcgacattgat
cttaactggagaatgcacaaggtctctgatggccagcgaagacgtgtccagatttgcatg
ggtctcctgaaaccattcaaggcaacttcttctgtttcttttcctttgtttcaggtgtta
ttgctagatgagatcaccgtcgacctggacgtgctcgcgcgatcagaccttctcgcgttt
ctcaagtccgagtgcctggaccgtggagcaactatcatctacgcaactcatatcttcgac
gggcttgagtcatggccttctcatattgcttatctggcaagcggtagactccagatcatg
aaacctctccacgagattccagagctcaaggagttatctctcatgagaacggttgagaaa
tggttgcggaaggagactaacgagcagagaaaggccagaaagctcaggctagaacaaggg
ctgccagaatttgaggaccggatcgaaggtagccgtgtcattggcggaagagaaaaggcg
ttaccactgaacaacggatggatcgaaggcaggatgacgtccagccttgcaggacaggag
gatcctttcaaccttagctccaaccgagttcttcgactgtga
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