Selaginella moellendorffii: SELMODRAFT_119272
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Entry
SELMODRAFT_119272 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_119272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_119272
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SELMODRAFT_119272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
AAA_28
AAA
ORC-CDC6-like
DUF3584
AAA_25
AAA_23
AAA_22
AAA_16
Arf
Zeta_toxin
NACHT
AAA_24
AAA_30
AAA_14
AAA_15
TsaE
Motif
Other DBs
NCBI-GeneID:
9644305
NCBI-ProteinID:
XP_002983986
JGI:
119272
UniProt:
D8SKK8
LinkDB
All DBs
Position
Unknown
AA seq
286 aa
AA seq
DB search
MEHEGVAPSPAPALSVRALQFSYPGQAPFVADLSLALLPGTRCLLVGANGAGKTTLLRIF
AGKHLVGGKDVVQVLGRSAFHDTALTCDGDLAYLGESWNRPIGSAGDVPLQGDFTAEHMI
FGVEGIDSDRRQRLIDLLDINLQWKMHKVSDGQRRRVQICMGLLRPYKVLLLDEITVDLD
VVGRMDLLSFFIEECTERGCTIVYATHIFDGLEAWATHLAYVVDGKLERFTMASDLLSTG
DSVTSLLNIIEPWLRDERKVRESRPKSSLPVQASPWASSRHMAYYR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgaaggagtggcgccatcgccagcgccagcattgtcggtgagggcgctgcaa
ttcagctacccaggtcaggctcccttcgtcgcggatctgtcgctggcgctgcttcctggg
acgcgatgcctgctcgtcggagcgaatggagcgggcaagacgactctgctgcggattttc
gctggtaagcacctcgtcggtgggaaagacgttgtccaggtgctcggaagatcggcattc
catgataccgcgcttacatgcgatggagatcttgcatacctcggagagtcttggaatcgt
cctatcggctcagcgggtgatgtgccattgcaaggggattttacagcagaacacatgatc
tttggtgtcgaaggaatcgattcggatagacgacaaagattgatagatcttttggatatc
aacctgcagtggaaaatgcataaagtttccgacggtcagcgtcgccgcgtgcaaatttgc
atggggcttctgcgaccttataaggttctcttgctggacgagatcactgtggatttagac
gtggttggaaggatggacttgctgagcttttttatagaggaatgcacagagagagggtgc
accattgtttatgcaacacacatttttgacggattggaggcctgggcaacacacctggcc
tatgtggttgatggaaaacttgagcggtttaccatggcttctgaccttcttagtactggc
gattccgttacgagccttctaaatattatcgagccatggctcagagacgagaggaaggtt
agagagtctcggccgaaatcctctctgccagttcaagcctcaccttgggcttctagtcgt
catatggcttattatcgctga
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