Selaginella moellendorffii: SELMODRAFT_231460
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Entry
SELMODRAFT_231460 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_231460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_231460
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SELMODRAFT_231460
Complex C
U5 SnRNP specific factors
SELMODRAFT_231460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
MMR_HSR1
EFG_III
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
9646253
NCBI-ProteinID:
XP_002969814
JGI:
231460
UniProt:
D8RFX7
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MDDSLYDEFGNYIGPDIESEEEGSEAEEEAIPAASGSAGRENAAWLTQGGGDDLDGPEDM
DTEGGIVLAEDKKYYPTAVEVYGEGVETLVMDEDAQPLEEPIIKPVRAKKFEVASREGVR
TFVSTEFMLGLMSNPGLVRNVALVGNLQHGKTLLMDMLVEQTHDMKTLDPNSEKHLRYTD
TRIDEQERQISIKAMPMSLVLEDSCGKSYLCNIMDTPGHVNFSDEMTAALRLADGAVVVV
DAVEGVMVNTERSIRHAIQERLPIVVVINKVDRLITELKLPPTDAYYKLKHTIEEINTFI
SSFSTNQAIDPVFGNICFASATAGWSFTLLSFAKLYVKLHGIPFDAEKFASRLWGDYYYH
SDTRTFKKTPPASGGDRSFVQFVLEPLYKIYSQLIGEHKKSVETVLEELGVKLSSAAYKM
NVKPLLKLACSSIFGSATGFTDMLVRHIPSAKVAAATKVEHTYTGPQDSMIAESIKTCDA
KGPLMVNITKLYPKSDCSVFDAFGRVLSGTIATGQKLRVLGEGYSPDDEEDMAIKEVTKL
WIYQARYRIAVSKAPVGSWVLIEGVDTSITKTATLCPEFTDEDVFIFRPLKFNTLSVVKT
ATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGEIFLDSIMKDLRELYSE
VEVKVADPVVSFCETVVESSSLKCFAETPNKRNKLTMLAEPLEKGLSEDIENGNVCIDWP
AKKVSEFFKVRYDWDVLAARSIWAFGPDKQGPNILLDDTLPSQVNKGLLSSVRDSIVQGF
QWGAREGPLCDEPIRNVKFKILDATIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEP
VYYVEIQTPVDCLTAIYTVLSRRRGHVTSDAPKPGTPAYVVKAFLPVIESFGFETDLRYH
TQGQAFCLSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSIN
KFFDDPMLLELARQDADLQQIL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcttgtacgacgagttcggcaactacatcggcccggacatcgagtcggag
gaggagggatccgaggcggaggaggaagcgattccagcggccagcggcagcgcaggtaga
gagaatgcagcgtggctcacacagggaggcggggacgatcttgacggccccgaggacatg
gacaccgagggtgggatcgttcttgccgaggacaagaaatattacccgaccgcggtggag
gtctatggcgaaggggtggagacgctggtcatggacgaggacgcgcagccgctggaggag
cccatcatcaagccggtgagagccaagaaattcgaggtagcgtccagagaaggtgtgagg
actttcgtctccacggagtttatgctcgggctcatgagcaatccggggctggttagaaat
gtggctctggtgggaaatctccagcacgggaagacgctcctcatggacatgctcgtggag
caaactcacgacatgaagacgctggatccaaactcggagaagcacttgcgctacacggat
actcggatcgacgagcaggagaggcaaatctctatcaaggccatgccaatgtcgctggtg
ctcgaagatagctgtgggaaatcctacctttgcaacatcatggacactccaggccacgta
aacttttcggacgagatgaccgcggctctgcgcctggctgatggagccgtcgtcgttgtg
gatgccgtggagggtgtcatggtaaataccgagaggtccattcgccatgcaatccaagag
cgactgcctatcgtcgtagtgatcaacaaggtggacaggcttataaccgaactcaagctg
ccgccgacagacgcctattacaaactcaagcatactatagaagaaatcaacacctttatc
agctctttctcgacaaaccaagcgattgatcctgtcttcggcaacatatgcttcgcaagt
gccactgccggctggtcgtttacgctactttctttcgcaaagctctacgtcaagctacac
ggcattccttttgatgcggaaaagtttgcaagtcgactttggggtgactattactaccac
tcggataccagaacttttaagaagactcctccggccagcggcggtgaccggtccttcgta
cagttcgtgctggagccgctgtataagatatacagtcagctgatcggtgagcacaagaag
agtgtcgagactgttctggaagaactaggagtgaagctgagtagcgctgcgtataagatg
aacgtcaagccgttgcttaagctcgcgtgcagctcgatatttggttcggccactggtttc
acggatatgttggtaaggcacattccttcagcaaaggtggctgctgcaacgaaagtcgag
cacacttacacaggtccacaggactcgatgatagcagagtccataaaaacctgcgacgcg
aaggggccgctgatggtgaacatcacaaagctctatccaaagagtgattgcagcgtgttt
gatgctttcggaagagttttaagtggaaccatcgccacgggtcagaagctccgggtcctg
ggagagggttattctccagatgacgaggaagacatggcaatcaaggaggtgacgaagtta
tggatttatcaggcacgttacaggattgctgtgagcaaggcacccgtgggaagctgggtg
cttatagagggtgtggacacatcaatcacgaagaccgcgactctatgcccggagttcact
gacgaggatgtctttatttttcggccgctcaaattcaacacgttgtctgtcgtgaaaaca
gcaactgagcctctaaatccgagcgagcttcccaagatggtcgaaggtcttcggaaaatc
agcaagagttatccactggctatcacgaaagttgaagagtccggagagcatactattctt
ggtaccggggagattttcctagactccatcatgaaagatttgcgagagctttactcggaa
gtcgaagtcaaggttgctgaccctgtggtatcattctgtgaaactgttgtggagtcctcg
tctttaaaatgctttgctgaaacgcctaacaaaaggaacaagcttaccatgctagccgag
ccgctcgaaaaaggactatccgaagatattgaaaatggaaacgtgtgtatcgactggcct
gctaagaaagtttcagagtttttcaaagtgaggtatgactgggatgttctcgccgcgcgg
tctatatgggcctttggtcctgataagcagggaccaaacattctcttggacgacacttta
cctagtcaagtgaacaaagggctcctcagttctgtcagggactccattgtgcaagggttt
caatggggtgcccgcgaaggacctctctgtgacgagcctattcgtaacgtgaagtttaaa
atactggatgcaacaattgcgcaagaacctttacatcgtggtgggggtcaaattattccc
accgcaaggcgggtcgcttactctgccttcttaatggcaacgccccggttgatggagcca
gtctactatgtggagatccaaacacctgtggattgtctcacggcaatctacacagttctt
tcacggaggcgaggacatgtcacgagtgatgcgccaaagcctggaactcctgcatatgtc
gtgaaggcatttctacccgtgatcgagtcattcggattcgagactgatttgcgctatcac
actcagggccaggccttttgtttgtctgtctttgatcactggtccatcgttccgggtgat
cctctagacaagtccgtggttctccggccactggaaccagcgcccgtgcaacaccttgca
cgagagttcatggtgaaaactcgtcgcaggaagggaatgagcgaagacgtgagcattaac
aagttttttgacgatccaatgctgctggaattggcgagacaagacgctgacttgcagcaa
attctctaa
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integrated database retrieval system
