Selaginella moellendorffii: SELMODRAFT_414166
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Entry
SELMODRAFT_414166 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SELMODRAFT_414166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_414166
Enzymes [BR:
smo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SELMODRAFT_414166
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SELMODRAFT_414166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
PTCB-BRCT
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
9656363
NCBI-ProteinID:
XP_002973996
JGI:
414166
UniProt:
D8RRV7
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MGENTVRFSAVSDMLERISKSKKLPVKRKTFRTFLDHFYTDREYFSVMRLVLPELDRERG
NYGLKESVLAKCLADALGLAKGSSDADKLVNWRKGGSSVGKNAGNFALVAAEIVGSRQSH
TSGGLTVKRVNELLDQLAEVKSREEKSKVLAEFINKTNPVEMKWLVMIILKDLKLGISEK
TVFKEFHPDADEVYNKTCDLKLVCEKLVDPKVRFKRQDIEVGKAVRPQLASRVKNAEDAW
KRMRGKRVIAECKFDGDRCQVHKDGNEVHFFSRSSIDHVEFAAAMSSVICENVKASKCIL
DGEMVVWNRVTNKFAEFGTIHAVAKNAKDGVQSDEQLCYIVFDILYLDDCSVIHQPLCER
QKLLEQKVTTVPGRFELLQPDRRNCGGQLWSITPQSAADVEKFFLMTVDNREEGIVVKDF
DSKWEPGDRSGKWMKLKPDYVKESEMDVLIIGGYYGSGRRGGDVAQFLLGIAERPASGYP
TKFHSFCKVGTGLSDEECRVLVDKLRPYFRKYDKNTKPPSYYVVTNNAKERPDVWIEQPD
KSVLLEVKSDIRKIKSEVFASPYSLRFPRVTRVRYDKPWNECLDIQELVRMVAEDTGAGV
NGDGDGGRKKKQERSPKKKAPKLPLLAPHMQQTDVSGVKKVSDMLSGLVFFLVNFKLEDK
ERFHKLVAEYGGKFSMNLNGDVTHVLAESPKGLLYETATKRGDVIHSSWFMDSIAAKELL
PLRPKYMLHLSYKTRETLKDTLDEFGDHYFVEVDEADMKQLFGRMRVEELSVNDKDVDEH
RGSLGDRKNIFEGCSFYFYYPREAAVADEAMIAGVVLRRLEVEVELRKGAVKPSLARATH
MIVFWDSERDHSEAGLSFSENKLVSSKKLRVLSHRWLEEALRRDSVPPEDDYDVRQALGS
RLVEESPPRQEEPELSKENSEHEAGDEEQDEERVSVFDTLVLEEMDGLENEELPPKKKRH
LQEMATPTLAKTLTLPTTSSSLDLWPTAQEAGANPTLVTSETLKLPSFEPQKLAACSETL
KLPSLEPRKLAACSETLKLPETPPATVITETVKLPSFEPDKAFDNLLADFAFLPSITREA
PAKGFAAPQQNKPRIVQEEVAKEDTAMKKSKASYKIEVPVEGFAGGFAAPQRNEPGTFQE
NGSSSREEIAMPMPAKKKNKTSLKDVVRNLL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgggggagaacacggtgagattcagcgccgtcagcgacatgctggagcgcatttccaag
agcaagaagctgccggtgaagcgcaagaccttccgcacctttctggatcacttctacacc
gatcgcgagtatttcagcgtgatgcgcctagttcttccggagctggacagggagcgcggc
aactacggcctcaaggaatcggtgctggccaagtgcctcgccgacgcgctgggcctggcc
aagggatccagcgacgccgacaagctcgtcaactggcgcaagggtgggtcgagcgtcggg
aagaatgccggtaactttgcgctggtcgccgccgagatcgtgggcagccgccagagccac
acctcgggcggcctcaccgtcaagcgcgtgaacgagctcctggatcagctggccgaggtg
aagagccgcgaggagaaatccaaggtcctggcggagttcatcaacaagaccaatcccgtg
gagatgaagtggctggtgatgatcatcctcaaggatctcaagctgggcatcagcgagaag
accgtcttcaaggagttccaccccgacgccgacgaggtgtacaacaagacgtgcgatctc
aagctggtttgcgagaagctggtggatcccaaggtgcgattcaagcgccaggacatcgag
gttggcaaggcggtgaggccgcagctcgcgtcccgggtgaagaacgccgaggatgcgtgg
aagaggatgagggggaagagggtgatcgccgagtgtaagttcgatggtgatcgctgccag
gtccataaggatgggaacgaggtccactttttctccaggagctccatcgatcacgtcgag
tttgccgcggccatgagcagcgttatctgcgagaacgtcaaggcgtcgaagtgtatcctc
gacggggagatggtggtgtggaaccgagtgacgaacaagtttgcggagtttgggacaatt
catgcggtggccaagaatgccaaggatggcgtccagagcgacgagcagctttgctacatc
gtcttcgacattctctacctggacgattgcagcgtgattcaccagccgctctgcgagcga
cagaagctgctcgagcagaaggtgacgactgtccctggccggttcgagctgcttcagccg
gatcggaggaactgcggcggccagctctggtcgatcactccacagtccgctgccgacgtc
gagaagttcttcctgatgaccgtggataacagggaggagggaatcgtcgtcaaggacttt
gattccaagtgggagcctggggacaggagtggaaagtggatgaagctcaagcccgactac
gtgaaggagagcgagatggatgtgctgatcattggtggctactatggatcgggacggcgg
ggtggtgatgtggctcagtttcttctcggcattgccgagcgtccagcgagcgggtatccg
accaagttccactcgttttgcaaggttggcacggggctcagcgatgaagagtgccgagtt
ttggttgacaaactaaggccgtatttcagaaaatatgacaagaacaccaagcctccgagt
tactacgtggtgactaacaacgccaaggagcgcccggacgtgtggatcgagcagccggac
aagtctgtgctcctggaggtgaagagcgatatccgaaagatcaagtcggaggtgtttgcc
tcgccttacagcctccgctttccaagagttaccagggtccggtacgacaagccttggaac
gagtgcttggatatccaggagcttgtgaggatggtggcggaggacacaggtgctggtgta
aatggagatggtgatggcggccggaagaagaaacaggagaggtctcccaagaagaaagct
ccaaagcttcctttgctggcgcctcatatgcagcaaacagacgtttccggcgtgaagaag
gtgtccgacatgctcagcggcctggtcttcttcctggtgaatttcaagctcgaggacaag
gagaggttccacaagctggtggccgagtatggagggaagttctcgatgaacttgaatggc
gacgtaactcacgtccttgccgagagtccgaagggccttctgtacgagaccgcaaccaag
cgaggggacgtgatccattcctcgtggtttatggactcgattgctgcgaaggagctcctt
ccgctcaggcccaagtacatgcttcacctctcgtacaaaacgagggagactctcaaggac
actttggacgagtttggagatcactactttgtggaagtggacgaggcagacatgaagcag
ctgtttggacgcatgcgagtcgaggagctctcagtgaacgataaagacgtggacgagcac
aggggcagccttggcgacaggaagaacatctttgaaggctgctcgttctacttttactat
cctcgcgaggcggcagtagcagatgaagcgatgattgctggagtcgttctcaggaggctg
gaagtggaagtggaattgcgcaagggtgctgtgaagccgtctcttgctagagcgactcat
atgatcgtgttctgggacagcgaaagggatcacagtgaagccggtctctctttctcggag
aacaagctggtttcaagcaagaagctgagagtcttgagtcacagatggttggaggaggcg
ctgaggagggatagtgttcctccggaggacgattacgacgtgaggcaggctttgggatct
cggctggtggaagagtctcctccacgacaagaagaaccagagctttcgaaagaaaactcg
gagcatgaagccggagatgaagagcaggatgaggagagggtgagtgtttttgatactcta
gttttggaagagatggacgggctggagaacgaagaactcccaccgaagaagaagcggcac
ttgcaagagatggctaccccgactctggcgaagacgctcactttgccaactacatcatcg
agtttggacttgtggcctaccgcgcaagaagctggagcaaatccgacactggtgacctcg
gagactttgaagcttccaagttttgagccacagaagttggcagcttgctcggagactttg
aagcttccaagtcttgagccacggaagttagcagcttgctcggagacattgaaacttccc
gaaactcctccagcgacagtgatcaccgagactgtgaagcttccgagctttgagccggac
aaggcgtttgacaacttgctggcggattttgcgttccttccctcgatcacaagagaagct
cctgcgaaaggatttgcagctccacagcaaaacaagccacggatagttcaagaggaagta
gcgaaggaagacacagcgatgaagaagagcaaagcaagctacaaaatagaagttcctgtg
gaaggatttgctggaggatttgctgctccacagcgaaacgagccagggacgtttcaagag
aatggcagctcctctcgggaagaaatagcgatgcccatgcccgccaagaagaagaacaaa
acaagcctcaaggatgtggttcgcaacttactgtaa
DBGET
integrated database retrieval system
