Streptomyces moderatus: POD33_20790
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Entry
POD33_20790 CDS
T10886
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smod Streptomyces moderatus
Pathway
smod03030
DNA replication
smod03410
Base excision repair
smod03420
Nucleotide excision repair
smod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
POD33_20790 (ligA)
03410 Base excision repair
POD33_20790 (ligA)
03420 Nucleotide excision repair
POD33_20790 (ligA)
03430 Mismatch repair
POD33_20790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smod03032
]
POD33_20790 (ligA)
03400 DNA repair and recombination proteins [BR:
smod03400
]
POD33_20790 (ligA)
Enzymes [BR:
smod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
POD33_20790 (ligA)
DNA replication proteins [BR:
smod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
POD33_20790 (ligA)
DNA repair and recombination proteins [BR:
smod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
POD33_20790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
POD33_20790 (ligA)
MMR (mismatch excision repair)
DNA ligase
POD33_20790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
POD33_20790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
ARMT1-like_dom
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WCH94436
LinkDB
All DBs
Position
4563118..4565310
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPTEAREQHAKLAEQIEEHRFRYYVKDAPVVSDAEFDDLLRTLEALEDDY
PELRTPDSPTQKVSVEFETDLAEVEHRERMLSLDNVFDDAGLAAWAERVHKDVGTPGYHF
LCELKVDGLAVNLTYENGRLTRAATRGTGRIGEDITPNVMTIAEIPHRLAGDHVPGLVEI
RGEVYFPMEAFEALNARRVAAGEKPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAL
EGFEGLSRLSGAYDLLKSWGLPTSRHNRVVDDLDGVREFIAYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPITVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPSECPE
CGTALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAAAALTKPLEPS
EPPLMDEGDLFDLSAEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGELKKNAV
SMLEFIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQASEEELANTDGVGS
IIAASLKEWFAEEWHQEILRKWRAAGVRMEEEGSGEDEGPRPLAGLTVVVTGTLEHFTRD
GAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEGGFNVLLEQGPEA
AAEVALPAEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccaccgaggcacgggagcagcacgcg
aagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccggtc
gtcagcgacgcggagttcgacgacctgctgcgcaccctcgaagcgctggaggacgactac
ccggagctgcgcaccccggactcgccgacgcagaaggtgtccgtcgagttcgagacagat
ctggccgaggtcgagcaccgcgagcgcatgctctccctggacaacgtcttcgacgacgcc
gggctcgccgcctgggccgagcgcgtccacaaggacgtcggcacccccgggtaccacttc
ctgtgcgagctcaaggtcgacggcctcgcggtgaacctgacgtacgagaacggcaggctg
acccgcgcggccacccgcggcacgggccggatcggcgaggacatcacgcccaacgtgatg
acgatcgcggagatcccgcaccgcctggccggcgaccacgtcccggggctcgtcgagatc
cgcggcgaggtctacttcccgatggaggcgttcgaggcgctcaacgcccgccgggtcgcg
gccggtgagaagccgtacgccaacccgcgcaactccgcatcgggttcactgcgtcagaag
gacccgaaggtcaccgcgacccttccgctgcacatggtcgtccacggcatcggcgccctg
gagggcttcgagggcctgtcccggctgtccggggcctacgacctgctcaagtcctggggc
ctgcccacctcccggcacaacagggtcgtcgacgacctcgacggcgtccgcgagttcatc
gcgtactacggcgagaaccgccactccgtggagcacgagatcgacggcgtggtcgtcaag
ctcgacgagatcccgctccagggccgcctcggctccacctcgcgcgccccgcgctgggcc
atcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgtgtgggc
gtcggccgcaccggccgggtcacgccgtacgcccaggtcgagcccatcacggtcgcgggc
tcggaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtcctc
atcggcgacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggaccg
gtcgtcgacctgcgtgacggcagcgagcgcgagttcgtgatgccgtccgagtgcccggag
tgcggtacggcgctcaggcccatgaaggagggcgacgtcgacctgcgctgcccgaacgcc
cgctcctgcccggcccagttgcgtgagcggctgttctacctcgcgggccgcaaggcgctg
gacatcgagcacttcggctatgtcgccgccgccgcgctgaccaagccgctggagccgtcc
gagccgccgctgatggacgagggcgacctgttcgacctgagcgcggaacagctgctgccc
atcagggcgtacgtcctcgaccaggacagcggcctgcccaagcgcgacccgaagaccggc
gaggagaagatcgccacggtcttcgccaaccagcagggcgagctcaagaagaacgcggtt
tcgatgctggagttcatcgccgccgccaaggagcgcccgctggcccgcgtcctcacgggc
ctgtcgatccgtcacgtcggcccggtcgccgccgaggcgctggcccgtgagttccgctcc
atcgaccgcatcgagcaggcgagcgaggaggagttggcgaacacggacggcgtcgggtcg
atcatcgccgcctcgctcaaggagtggttcgccgaggagtggcaccaggaaatcctgcgc
aaatggcgggcggccggcgtgcgcatggaggaggagggctcgggcgaggacgaggggccg
cgtccgctggcggggctcacggtcgtggtcaccggcacactggagcacttcacacgcgac
ggcgccaaggaagcgctgcagagccgcggagcgaaggtaaccggttccgtttcgaaaaag
acatcttttgtggtggtgggcgacaaccccgggtccaagtacgacaaggcaatgcagctg
aaggtgcctgtcctgaacgagggcggcttcaatgtcctgctggaacaggggccggaagcg
gcggccgaagttgccctccccgcggaggagtaa
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