Spiroplasma monobiae: SMONO_v1c01120
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Entry
SMONO_v1c01120 CDS
T06543
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smoo
Spiroplasma monobiae
Pathway
smoo03030
DNA replication
smoo03410
Base excision repair
smoo03420
Nucleotide excision repair
smoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMONO_v1c01120 (ligA)
03410 Base excision repair
SMONO_v1c01120 (ligA)
03420 Nucleotide excision repair
SMONO_v1c01120 (ligA)
03430 Mismatch repair
SMONO_v1c01120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smoo03032
]
SMONO_v1c01120 (ligA)
03400 DNA repair and recombination proteins [BR:
smoo03400
]
SMONO_v1c01120 (ligA)
Enzymes [BR:
smoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SMONO_v1c01120 (ligA)
DNA replication proteins [BR:
smoo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SMONO_v1c01120 (ligA)
DNA repair and recombination proteins [BR:
smoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SMONO_v1c01120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMONO_v1c01120 (ligA)
MMR (mismatch excision repair)
DNA ligase
SMONO_v1c01120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMONO_v1c01120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
Imm41
Guanylate_kin
Motif
Other DBs
NCBI-ProteinID:
AUM62365
UniProt:
A0A2K9LVJ9
LinkDB
All DBs
Position
122053..124047
Genome browser
AA seq
664 aa
AA seq
DB search
MKEIIEKVNILKEKLNKWGHAYYVLDNPVVDDAEYDKALNELINFEKKYPELLTQDSPTQ
KVGGVVMDKFEKYKHKLPMLSLSNAFNKDDLINFDDQILKEIENKKYNFFVEPKIDGLSI
SLIYKNGILFKGVTRGDGFYGEDVTSNVKTIKSIPLSISDKNDYVEIRGEVFLSKKEFEK
INKQRQNNDEELFANPRNAAAGTLRQLDSSIAASRNLDAFLYYFMDREKFHTHSDSLNYL
EEMNFKINNLGKICNSIEEVYSHIEYIQSQRENLEYEIDGVVIKINDFDLYEKVGYTAKS
PKWAIAFKFPAEVKETTLKNIFASVGRTGRITYNASLEPVQIAGTTVQAATLHNADFIIQ
RDIRIGGKVKIKKAGDIIPEVIAPIQNEEYIKLKKWTEDIICPECNSNLERVDGEVDQYC
INSQCPRKIVRGLEHFVSRDAMNIEGLSIKIIEKLFESKFINNVADIFKLKKFQKELIQL
DKMGEKSVNNLLESIEKSKQNSLEKLFFGLGIRHVGKKTAKTLAINFKSIDEISKLGFDQ
LDQINDIGPIVAKSVCDWFEIEQNLNLIKDLKELNVNMIYLGNEGTKNNDKITMKSFVIT
GTLSKPRNYFKDLLEEFGAKVIDTVSKKTDFLLAGKEAGSKLEKAEKLGIKILSEDDFLE
MIGE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaataatagaaaaagttaatatcttaaaagaaaaacttaataaatgaggtcat
gcatattatgttttggataatccagttgttgatgatgcggaatatgataaagcattaaat
gaattaattaattttgaaaaaaaatatccagaattattaacacaagattctccaacacaa
aaagttggtggtgttgttatggataaatttgaaaaatataaacataagttgcctatgttg
agtttatcaaacgctttcaataaagatgatctaataaattttgatgatcaaatattaaaa
gaaatagaaaataaaaaatataatttctttgtagagcctaagattgatggtctatcaatc
tctttaatttacaaaaacggaattttatttaaaggagtgacaaggggagatggattttat
ggagaggatgtaacttcaaatgttaaaacaataaaaagtattcctttatctatttctgat
aaaaatgattatgtagaaattaggggagaagtttttctttctaaaaaagaatttgaaaaa
atcaataagcaaagacaaaacaatgatgaagagttatttgcaaatccaagaaatgctgct
gcaggtacactaagacaattagattctagtattgctgcttctagaaacctggatgctttt
ttatattattttatggatagagaaaaatttcatacacacagtgattccttaaactattta
gaggaaatgaattttaaaataaataatcttggaaaaatttgtaattcaatagaagaagtc
tattctcatattgaatacatacaaagtcaaagagaaaatctagaatatgagattgacggt
gttgtgataaagataaatgattttgatttatatgaaaaggttggatacactgcaaaatca
ccaaagtgagcaattgcatttaagtttccggcagaagttaaagaaacaactttaaaaaat
atttttgcttcagttggcagaactggaagaataacttacaacgcttcacttgaacctgtt
caaattgcaggcaccacagttcaagccgcaacattacataatgctgactttataattcaa
agggatataagaattggtggcaaagtaaaaataaaaaaagctggagacataattcctgaa
gttatagcaccaatacaaaacgaagaatatataaaattaaaaaaatgaactgaagatata
atttgtcctgaatgtaattctaatttagaaagggttgatggagaagttgatcaatactgt
attaattctcaatgtcctagaaaaatagttagaggacttgaacattttgtatcaagagat
gcaatgaatattgagggtttaagtataaaaatcattgaaaaactttttgaaagtaaattt
ataaataatgtagccgatatattcaaattaaaaaaattccaaaaggaattaattcaattg
gataagatgggagagaaatctgtaaataacttattagagtcaattgaaaagtcaaagcaa
aattcattggaaaaactattctttggtttaggtataagacatgtcggaaagaaaacagca
aaaaccttggctataaattttaaaagtatagatgaaatatcaaaattaggttttgatcaa
ttagatcaaataaatgatattgggcctatagttgcaaaatctgtttgtgactgatttgaa
atagagcaaaatttaaatttgataaaagatttaaaagagttaaatgtaaatatgatttat
ttgggtaatgaaggaacaaagaacaatgataaaataactatgaaaagctttgttattaca
ggtactttaagtaagcctagaaattattttaaggatttgctagaagagtttggtgcaaag
gtaattgatactgtgagtaaaaaaacagacttcttattagctggtaaagaagcgggtagc
aaattagaaaaagctgaaaagttaggaataaaaattttatcagaagatgattttttagaa
atgataggtgaatag
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