Sphingomonas morindae: LHA26_02320
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Entry
LHA26_02320 CDS
T08557
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smor
Sphingomonas morindae
Pathway
smor03030
DNA replication
smor03410
Base excision repair
smor03420
Nucleotide excision repair
smor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LHA26_02320 (ligA)
03410 Base excision repair
LHA26_02320 (ligA)
03420 Nucleotide excision repair
LHA26_02320 (ligA)
03430 Mismatch repair
LHA26_02320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smor03032
]
LHA26_02320 (ligA)
03400 DNA repair and recombination proteins [BR:
smor03400
]
LHA26_02320 (ligA)
Enzymes [BR:
smor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LHA26_02320 (ligA)
DNA replication proteins [BR:
smor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LHA26_02320 (ligA)
DNA repair and recombination proteins [BR:
smor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LHA26_02320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LHA26_02320 (ligA)
MMR (mismatch excision repair)
DNA ligase
LHA26_02320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LHA26_02320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
USI73338
LinkDB
All DBs
Position
1:complement(484497..486587)
Genome browser
AA seq
696 aa
AA seq
DB search
MTEDEARARLAWLAAEIARHDRLYHDQDAPEISDADYDALVRENRALEADWPALARDDSP
SRRVGVAPSSPLAKIAHAKAMMSLDNAFADDEVREFVARVRRFLALAEDAPVALTAEPKI
DGLSCSLRYEQGRLVQAATRGDGTTGEDVTPNVRTIADVPERLAGDAPAVFEVRGEVYMA
KADFAALNARLAGERVFANPRNAAAGSLRQKDAAVTRARPLRFLAHGWGEVSALPAESQA
GVMAAIAGWGLPVSDLLALCATVDEALERYRAIERRRADLPFDIDGVVYKVDRLDWQQRL
GAVARAPRWAIAHKFPAERAETLLERIDIQVGRTGALTPVARLEPVTVGGVVVTNATLHN
ADEIARLGARPGDRVVVQRAGDVIPQIVEVLTRDAARPDFVFPDHCPECQSLVERGPGEV
VYRCTGGLICPAQRVERLRHFVSRHAMDVEGLGLTLIEDFFRDGLIATPADIYRLTEETL
RARKKDGRVWAANLVKGIDASRTRPLDRFLFALGIRHVGEVTARDLARRFGTLEALRARL
DALCEARAALTQAPGESDEKFAARRAKQLAEAIDVAGIGPEVADALVDFWAEPHNRAAVQ
DLLDQGVTPAEVVHRTVESEISGQTVVFTGKLVTMSRDEAKAQAERLGAKAAGSVSKATD
LVVAGADAGSKLKKAQDLGIKVVSEEEWAAIVARAG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggatgaggcccgcgcgcggctggcctggctcgccgccgagatcgcgcggcac
gaccggctctatcacgatcaggacgcgccggagatttcggacgccgactatgacgcgctg
gtgcgcgagaatcgcgcgctggaggcggactggccggcgctggcgcgcgacgattcgcct
tcgcgccgggtcggcgtggcgccgtccagcccgctcgccaagatcgcgcatgccaaagcg
atgatgagcctcgacaacgccttcgccgatgacgaggtgcgcgagttcgtggcgcgggtg
cggcgcttcctggcgctggccgaggatgcgccggtggcgctgaccgccgagcccaagatc
gacggcctgtcctgctcgctgcgctacgagcagggccggctggtgcaggcggcgacgcgc
ggcgacggcaccacgggcgaggatgtcacccccaatgtccgcaccatcgccgacgtgccc
gagcggcttgccggcgatgccccggcggtgttcgaggtgcgcggcgaagtctacatggcc
aaggccgatttcgcggcgctcaacgcgcggctggccggcgagcgcgtgttcgccaatccg
cgcaacgcggcggcggggtcgctgcgccagaaggacgcggcggtgacgcgggcacggccg
ctgcgcttcctcgcgcatggctggggcgaagtgtccgcgctgcccgccgagagccaggcg
ggggtgatggcggcgatcgccggctgggggctgcccgtttccgatttgctggcgctgtgc
gccaccgtggacgaggcgctggagcgctaccgcgcgatcgagcggcggcgcgccgacctg
cccttcgatatcgacggcgtggtgtacaaggtggatcggctggattggcagcagcggctg
ggcgcggtggcgcgcgcgccgcgctgggcgatcgcgcacaaattcccggccgaacgcgcc
gagacgctgctcgagcggatcgacatccaggtcggccgcaccggggcgctcacccccgtg
gcgcggctcgagccggtgacggtgggcggcgtggtggtgaccaacgcgacgctgcacaat
gccgacgagatcgcccggctcggcgcccgcccgggcgaccgggtggtggtgcagcgcgcg
ggcgacgtgattccgcagatcgtcgaggtgctcacgcgtgatgccgcgcggcccgacttc
gtctttcccgatcattgcccggaatgccagtcgctggtggagcgcgggccgggcgaggtc
gtgtatcgctgcaccggcggcctgatctgtcccgcgcagcgcgtggagcggctgcgccac
ttcgtgtcgcgccacgccatggacgtggaagggctggggctgacgctgatcgaggatttc
ttccgcgacgggctgatcgctacgccggccgacatctaccggctgaccgaggagacgctg
cgcgcgcgcaagaaggatgggcgcgtctgggcggccaatctcgtgaaggggatcgacgcc
agccgcacgcggccgctggatcgctttctgttcgcgctcggcatccgccatgtcggcgag
gtgacggcgcgcgatctcgcgcggcggttcggcacgctggaagcgctgcgcgcgcgactg
gacgcgctgtgcgaggcgcgcgcggcgttgacgcaggcgcccggcgaaagcgacgagaaa
ttcgccgcgcgccgcgccaagcagctggccgaggcgatcgacgtggccggcatcggcccc
gaggtggcggacgcgcttgtggatttctgggcggagccgcacaatcgcgcggccgtgcag
gatctgctcgaccagggcgtcacgcccgccgaggtggtgcaccgcacggtcgagtccgag
atttcgggccagacggtggtatttaccggcaagctcgtcaccatgtcgcgcgacgaggcg
aaggcgcaggcggagcgactcggcgccaaggcggcgggatcggtctcgaaggcgaccgat
ttggtcgtggccggggcggacgcgggctccaagctcaagaaagcgcaggatctcgggata
aaggtggtgagcgaggaggaatgggcggcgatcgtggcgcgcgcggggtag
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