Sordaria macrospora: 10809135
Help
Entry
10809135 CDS
T01610
Symbol
SMAC4_00082
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smp
Sordaria macrospora
Pathway
smp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
10809135 (SMAC4_00082)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smp03400
]
10809135 (SMAC4_00082)
Enzymes [BR:
smp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
10809135 (SMAC4_00082)
DNA repair and recombination proteins [BR:
smp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
10809135 (SMAC4_00082)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAM1_N
HAM1_C
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT_2
DNA_ligase_A_C
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
10809135
NCBI-ProteinID:
XP_003351540
UniProt:
F7VK39
LinkDB
All DBs
Position
4:complement(join(2984219..2987352,2988246..2989944,2990005..2990507,2990571..2990898,2990969..2991097))
Genome browser
AA seq
1930 aa
AA seq
DB search
MATVNGKANVNRPVDAKQKEADVNRKLQFYGIASAFQHGKVPSNDQIDVALNSFLQSRAL
ANPSKKLSTEGQALVADFREVVRQAKNLLLSKNDGNLLQDFIWQTQQWDPKAVNVPGAPV
NKEQAQQHGNQALEGLRTLGTLIITNGQFRKLLKDATVLLRDIAGDAATNAAARVRPSQE
DLQQIDAPAADNTWHEKPELSRDQVKSKFNDFYKGNPKEDAKHIMGEATSAAHPDGSANP
RDLANTAAHDGRTGGSSGIDAQKGVSAAANTAQQKIDQNLDDETREKAKNKKEEYRARTR
EYFQKKVPQERREQTIWRLKKMVVECQQHPDYQRAITTLLNLAEEYGSHANRLAQGGTGT
VKETRTALAQAEGDLKTLIERFANGTSSDDLWASINTIYEDADRDPELKNWFKAMNSYIR
RCLREEGYILDDASNEEWNRLYDHGNYLLRNKYRAHTDRIVDELKFLADQFDQDPQNQSF
AASLNKLFADLGNDENGKPTFKPHLIKDLTDVIIPAMFENVAYIPVPRIEYSDPQIDAVI
ENLVLESDNFMPNVLEVASENYMRFGRKKIANKNRMAVDVKVAGIQMDLRDVSYYIKRKQ
GFPSLSDTGIFNILLEGDGFTFRMKMSSADAKDRQNFFKIDKVDVDVKNLRIKLVKSNHK
LLFNLFKPIMLKVLRPGLQKALEKAIRDQAARLDSMLYEIKQEADRALDEAREDPEKTPN
IYNRYVTAAQKKILQGKQKAQGVVADKKVNYAVTKEDSIFPHIHLPGGISSKATEYKDLA
RKGDKWESPVFSIGSAGKSHDIPGAPHVVRKPHAASNPHTASNPHAATNGAAHGSGNGYA
LHGGPGANVGNGGLNVPGGNYLPSDPAMGGHGMKTVGTAPNGRVAVVHISMEEADPHHMY
FQSSPLTRNPSFPNRPHNHSKTFPFSDLYRTLFNPLIDCKPSTSGGGPVRGPKPGRGGHF
SSTVSYHEQRRHIIERFMSRWRSEVGNDFYPAMRLILPDKDRDRGVYGLKENSIGRLLVK
VMKIDRNSEDGYNLMHWKLPGQSGISRSVGDFAGRVFEVVSKRAMRSEPGNMTVADVNVL
LDRLAGASGEAEQMPIFDEFYRQMNAEEVMWLVRIILKDMRVGATERTFLNLWHPDAEAL
FSVSSSLRRVCWELYDPEFRLEQQETGITLMQCFQSQLAQFQMTTTFDKLVKNLGVTEEG
QEFWIEEKLDGERMQMHMMEDDTVPGGFRFAFWSRKAKDYTYLYGESLGDEQSALTRHLR
NAFADGVRNLILDGEMITWDIDIDKMVPFGTLKTAALEQQKNPSKAGPRPLYRVFDIMLL
NDKPLTEYTLNDRRKALERAVVGVHRRLEILPFERATSPDAIEPLLRRVVAEASEGLVLK
NPRSRYSLNSRNNDWIKVKPEYMSEFGESMDCVVVGGYFGSGRRGGTLSSFLCGLRVSQN
LIESGKAATAEKCLSFFKVGGGLKAEDYAEIRHHTEGKWQDWDAANPPTEYIELGGGERL
QYEKPDVWIRPSDSVVISVKAASITPTDQFAMGWTLRFPRFRKLRLDRTWDSALDMDEFE
VLRSKIKDQEQERKKMEMESRKRKPATKRARKDLVIAGMSNPSLSSSATPFVAPRATREA
STHLFIGLDFCVLSESLKPNKMAKPALEKLIKDHGGRIYQQVVDRSGDQEKIIIPIADKN
VVKVASLKKAHPEMDIIRPKWVFDCLAQPMSRKEKGYLLPFEPIHIFHAGSEQTEQEAEE
AVDRFGDSYARDLADIDELKAVMEGMDQSDEYVSDSDWDSDSGSKKNRGGGFDMNHFLGH
LEAQGAASLDELRSFMFRRCRVFFALADADDNGEASTLCESKALKLENYVRFGNGTVVDE
LEQATHVVVFTASEGSEGSKKKEREMVAEIRYKISLGEMGSPVPRIVKGEWVEESWKEGT
VVDEEAYVAR
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgtcaacggaaaggcaaacgtcaaccggccagttgatgccaagcagaaggag
gccgacgtcaaccgcaaacttcagttctacggaatcgccagcgctttccagcacggcaag
gttccttcgaacgaccaaatcgatgtcgcgttgaacagcttcctccagtccagggcgctc
gcaaacccatccaagaagctctccaccgagggacaggcgcttgttgccgatttccgggag
gttgtgagacaggccaagaatctcctgctctccaagaacgacggaaacctccttcaggat
ttcatttggcagacacagcaatgggaccccaaggctgtcaacgtccctggtgcccctgtg
aataaggaacaggcccagcagcatggcaaccaggccctcgagggattgcgcactctgggc
acccttattattaccaacggccagttccgtaagctgctcaaggatgccactgttctcctc
cgtgacatcgctggcgatgctgctaccaatgccgcagctcgcgtgagaccttcccaggag
gatctccagcagattgatgcgcccgctgccgataacacttggcacgagaagcctgagctt
tcccgcgatcaggtgaagagcaagttcaatgacttctacaagggaaaccccaaggaggac
gcaaagcacattatgggcgaggccacctctgctgctcaccctgatgggtctgccaacccc
agagatctagccaacaccgctgctcacgatggccgcactggcggctcttccggaatcgac
gctcagaagggtgtctctgctgctgcgaacaccgctcagcaaaagattgaccagaacctc
gatgatgagaccagggagaaggctaagaataagaaagaggagtacagggcccgcaccagg
gagtacttccagaagaaggttccccaggagcgtcgtgagcaaaccatttggcgcttgaag
aaaatggtcgttgaatgccagcaacaccctgattaccagcgtgcgattaccactttgctc
aacctcgccgaggagtacggtagccacgccaacagacttgctcaggggggcactggtact
gtgaaggagacccgtaccgctttggctcaggccgagggtgatctcaagaccctcatcgag
cgcttcgccaacggcacatccagcgatgatctgtgggcttctatcaacaccatctatgag
gatgccgacagagatcccgagttgaagaactggttcaaggctatgaatagctacattcgc
cgctgcctcagggaggagggctacattctcgacgatgcatccaacgaggagtggaaccgc
ctctacgaccacggcaactacctcctccgcaacaagtatcgcgcccatactgaccgcatt
gttgatgagctcaagttcttggccgatcagttcgaccaggatcctcaaaaccagagcttt
gcggcttccctcaacaagctgttcgccgacctgggcaacgatgagaacggcaagcctacc
ttcaagccccatctcatcaaggatttgaccgacgtaatcattcccgccatgttcgagaat
gttgcttacattccggttccccgtatcgagtactcggatccccagatcgacgccgtcatc
gagaatctcgtccttgaaagcgacaacttcatgcccaatgtcctcgaagttgctagtgaa
aactacatgcgctttggtcgcaagaagatcgccaacaagaacaggatggccgttgacgtc
aaggttgctggtatccagatggatctgcgcgatgtgagctactacatcaagcggaagcag
ggcttcccatcgctcagcgacaccggtatcttcaacattctgcttgaaggcgatggcttc
accttcaggatgaagatgtcttctgcagatgctaaggacaggcagaacttcttcaagatt
gacaaggtggatgtcgatgtcaagaacttgcgtatcaagttggtcaagtccaaccacaag
ctgcttttcaacctcttcaagcccatcatgctcaaggttctccgccctggcctccagaag
gctcttgagaaggccattcgcgaccaggctgccagacttgacagcatgctgtacgagatc
aagcaggaggctgacagggctcttgatgaggctcgtgaggatcccgagaaaactcccaac
atctacaaccgctacgtcacggcggctcagaagaagatcctccagggcaagcagaaggcc
cagggcgttgttgcagacaagaaggtcaactatgctgtcaccaaggaggacagcatattc
ccccacatccaccttcctggcggaatcagctccaaggccacggagtacaaggacctcgct
cgcaagggagacaagtgggagagccccgtcttctcaattggctctgctggcaagagccac
gacatccctggcgctcctcatgttgttcgcaagccgcacgctgccagtaacccgcacact
gccagtaacccgcacgctgccactaatggtgcagcccacggttctggcaacgggtacgcg
ctccacggcggtcctggcgcgaacgtcggcaacggtggcctgaacgttcccggtggcaac
taccttcctagcgaccctgctatgggcggccatggtatgaagactgtcggcactgcccct
aacggccgcgttgctgtcgttcacatctccatggaggaagcagatccccatcatatgtat
ttccaatccagtccactaacccgaaaccccagctttccaaaccgaccccataaccactcc
aaaaccttccccttctccgatctctaccgcaccctcttcaaccccctcatagactgcaaa
ccctccacctccgggggcggccctgtccgcggccccaagccaggtcggggcggccacttc
tcctccacggtatcttaccatgagcagcgccgccacatcatcgagcgcttcatgtcccgc
tggcgctccgaagtaggcaacgacttctatccggccatgcgcctgatcctgcccgacaag
gatcgcgatcgcggggtgtacgggctgaaggagaatagcattgggaggttgctggtgaag
gtgatgaagatcgatcgcaactccgaggatggatataatcttatgcactggaaattgcca
gggcagagcgggattagtaggtcggtgggcgactttgcggggagggtgtttgaggttgtc
agcaagcgggcgatgaggagcgagccgggaaacatgacggtggcggatgtcaatgttttg
cttgacaggctggcgggggccagtggcgaggcggagcagatgccgattttcgacgagttt
tacagacaaatgaatgccgaggaggtgatgtggttggtgaggatcattctcaaggatatg
agggtcggcgcgacggagcggacatttcttaacttgtggcatccggatgccgaggcgctg
tttagtgtgtcttcgagcttgaggagggtgtgttgggagttgtatgatccggagtttcgg
ctggagcagcaggagacggggatcacgctgatgcagtgcttccagtcgcagctggcgcag
tttcagatgacgacgacgtttgataaattggtgaagaatctgggcgttacagaggagggc
caggagttttggatcgaggagaagctggatggtgaaaggatgcagatgcatatgatggag
gacgataccgtgccgggagggttcaggtttgcgttttggtccaggaaggcgaaggattac
acatatctttatggcgagagcttgggcgatgagcagtccgctctgacacggcatctgcgc
aacgcctttgccgacggcgtaaggaacttgattcttgacggagagatgattacgtgggac
atcgatatcgacaagatggtcccctttggaacgctcaagacggccgcgctggagcagcaa
aagaacccatccaaggccggtcctcgtccgctttaccgtgtcttcgacatcatgctccta
aacgacaagccgcttaccgagtacaccctcaacgaccggcggaaagccctcgaacgcgcc
gtcgtcggcgtccaccgccgcttggagattcttcccttcgagcgagccacctccccagac
gccatcgagccgcttctacgacgagtcgtagccgaagcatcggagggtcttgtcctcaag
aacccgcgctcgcgttactcgctgaacagtcgcaacaacgactggatcaaggtcaaaccc
gagtacatgtccgagttcggcgagtcgatggactgcgtggtagtaggtggctacttcggc
tccggccggcgaggcggcacgctctcttccttcctctgcggtctgcgcgtctctcaaaac
ttgatcgaaagcggcaaagcagcgaccgccgaaaaatgtctttccttcttcaaagtcggc
ggcggtctcaaggcggaggactacgccgagatccggcatcacactgaagggaaatggcag
gactgggacgctgccaatccgcccacagaatacatcgagctcggcggaggagagaggttg
caatatgagaagccggacgtgtggatccgaccgagcgactcggtcgtcatctcagtgaaa
gccgccagcatcacgccaacggaccagttcgccatgggctggacgttgcggttcccacgg
ttccgtaagctgcggctggatcgcacgtgggactcggcgctggacatggacgagtttgaa
gtcctacgatccaagatcaaggaccaggaacaggaacgcaaaaagatggagatggagagt
cgcaagcggaaaccggcaaccaagcgcgccaggaaagatctggttattgcgggcatgtct
aatccctccttgtcatcttctgctacacccttcgttgccccgcgagcaacgcgcgaagcc
agcacccacttattcataggcttggacttttgcgtcctttcagagtctctcaaaccaaac
aagatggccaagccagctttggagaaactcataaaagaccacggcggccgcatctaccag
caggtggtagaccgctctggtgaccaggaaaagataatcatccccatagcagataagaac
gtggtcaaagtggcttccctcaaaaaggcccacccggagatggacatcatcaggccgaaa
tgggtgtttgactgtcttgcgcagccaatgtcacgaaaggaaaagggttacctcctcccc
tttgaacctatccacatcttccacgctggtagcgaacaaacagagcaagaagcagaagaa
gcagtggatagatttggagatagctacgctcgtgacttggctgacatagacgagttgaag
gcggttatggaggggatggaccagtctgatgagtatgtttctgactcggactgggattcg
gattccggttctaagaagaacagaggaggagggttcgatatgaatcacttccttggccac
ctagaagcgcagggcgcggcttcgctggatgagttgcgctcgttcatgtttcggcggtgc
cgggttttttttgctttagctgatgctgacgacaacggcgaagcatctacactctgtgaa
agcaaagccttgaaattagagaactatgtacggtttggtaacgggacggtagttgacgag
ctggaacaggcgacgcatgtggttgtttttactgcttctgaaggctcggaagggagtaag
aaaaaggagagagagatggtggcggagattaggtataagattagcttgggagagatgggg
agtccggtgccgaggattgtgaagggggaatgggtggaggagtcgtggaaggagggcacg
gtggttgatgaggaggcgtatgtggctaggtag
DBGET
integrated database retrieval system
