Stenotrophomonas maltophilia R551-3: Smal_2583
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Entry
Smal_2583 CDS
T00733
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03030
DNA replication
smt03410
Base excision repair
smt03420
Nucleotide excision repair
smt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Smal_2583
03410 Base excision repair
Smal_2583
03420 Nucleotide excision repair
Smal_2583
03430 Mismatch repair
Smal_2583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smt03032
]
Smal_2583
03400 DNA repair and recombination proteins [BR:
smt03400
]
Smal_2583
Enzymes [BR:
smt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Smal_2583
DNA replication proteins [BR:
smt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Smal_2583
DNA repair and recombination proteins [BR:
smt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Smal_2583
NER (nucleotide excision repair)
GGR (global genome repair) factors
Smal_2583
MMR (mismatch excision repair)
DNA ligase
Smal_2583
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Smal_2583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ACF52283
UniProt:
B4SP88
LinkDB
All DBs
Position
complement(2881047..2883512)
Genome browser
AA seq
821 aa
AA seq
DB search
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT
QQVGARPSGRFAEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLQFSAEPKMDGLA
ISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGEVYMARAD
FEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGGELPDTHS
GTLAQLGSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAM
GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHN
ADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTQCPVCGSEIVREEG
AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKGVADLYRLSRD
QLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALVQPASFEW
NTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPW
PLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDAHAPSAKLREGLDLAQL
LVESEIPGITRLRAEKLVAALPSAQAVLDAEHGQFVNAGLPDDTARGLAEWLDAEGHGAM
LLAAEKAMRQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV
SKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagccccgccgaacgcgccgaagaccttcgccggcagatcgcccaggccaac
cgcgcctaccacgagctggatgcaccggagatccccgacgtcgactacgaccggatggtg
cgcgaactggaagcgctggagcgcgagcatccggaactggcccgtgccgacagcccgacc
cagcaggtaggagcgcgtccctcgggccgtttcgccgaggtgcgccacgcggtgccgatg
ttgtcgttgtccaatgctttcagcgatgaggaagtggccgatttcgtgcgtcgcatcgat
gagcgcctgggccgccgcagcctgcagttctcggccgagccgaagatggacggcctggca
atcagcctgcgctacgaagaggggcatttcgtactgggcgcgacccgcggtgatggcagc
accggcgaagacgtgacggccaacctgcgcgagatcggcgatatccccaagcgcctgaac
ggcaaggactggccggatgtgctggaagtacgcggcgaggtctacatggcccgcgccgac
ttcgaggcctacaacgagcgtgcgcgcctgcagggtggcaaggtgctggccaatccgcgc
aatgctgcggccggctcgctgcgccagctcgacccgaagatcagcgcgcagcgcaagctg
agtttctttgcctacggcaccggcgaggtgcaggggggcgagcttcccgatacccattcg
ggcacgctggcacagctcggcagctggggcttcccggtcagtgcgctgtgcagggtggtg
gatggcaccgatggcctgcttggctactaccgtgacatcggcgagcgccgtgacggcctg
ccgttcgatatcgacggcgtggtctacaagctggacgaccgcgccgggcagcaggcgatg
ggcttcgtgtcgcgcgcaccgcgctgggccatcgcacacaagttcccggcgcaggaacag
agcaccaccgtggaagcgatcgagatccagatcggccgcaccggtgccgccacgccggtc
gcgcgcctggcgccggtggccgtggccggtgtgatcgtctccaatgccaccctgcacaat
gccgaccagatcgcgcgcctcgatgtgcgcgtcggcgacagcgtgatcgtgcgccgtgcc
ggtgacgtgatcccggaagtggtcagcgtcatcctcgaccgccgtccgcagggcaccacg
ccttggcagatgccgacgcagtgcccggtgtgtggctcggagatcgtgcgcgaggaggga
gcggcggcgtggcgttgttcgggcgagctgtcctgcccagcgcagcgcaaggaggccatc
gcgcacttcgcctcgcgccgcgcgatggacatcgacggtctcggcgacaagtacatcgag
accctggtcgacgccggcatcgtcaagggcgtggccgatctgtaccggctcagccgtgac
cagctgctgcacctgaaactggtgctggatgccgaagatccttcggcattggctgccgca
ctgaagctgcatctgcctgccgaaggcagcggcgcggtgctcaatgccgtgctcaagctg
gacggcaacgatccgggctggcgcgcgcaggcactggtgcagccggccagctttgaatgg
aacacgaagaagatcgccaccaagtgggctgacaacctgatcgcggcgatcgacgccagt
cgtgctgccacgctcgaacgcctgctgttcgcactgggcatcgaacacgtcggcgaaagc
acggccaaggcgctggcgcagtggtttggcgatctggagttgatccgccatctgccgtgg
ccgctgttcaagcgcgtgccggacatcggtggcgaagtagcccgctcgctcggtcatttc
ttcgaacagcagggcaaccagcaggccatcgatgatctgttgcaggtcggccaggtgcgc
atcagcgatgcacatgcccccagcgccaagctgcgcgagggcctggacctggcgcagttg
ctggtggaatcggagattcccggcatcacccgcctgcgtgcggaaaaactggtcgctgcg
ttgcccagcgcgcaggcagtgctcgacgccgagcatggccagttcgtcaacgccggcttg
cccgacgacaccgcacgcggactggccgagtggctcgatgccgagggccatggcgcgatg
ctgctggctgctgagaaagcgatgcggcagattctggccaaggcccccgcgcttgcggag
atcgtggctggcccgctggatgggcagaccgtggtgctgaccggcaccctggcccagctc
acccgcgatgccgccaaggagcgcctggaagcgttgggtgccaaggtttccggcagcgtc
tcgaagaagaccagcttcgtggtggccggtaccgaggccggctccaagctggacaaggcg
cagtcgctgggcgtgccggtgtgggacgaagaccgcctgctggcctatctcgccgaacac
gaatga
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