Streptococcus mutans GS-5 (serotype c): SMUGS5_06950
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Entry
SMUGS5_06950 CDS
T02185
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
smut
Streptococcus mutans GS-5 (serotype c)
Pathway
smut03030
DNA replication
smut03410
Base excision repair
smut03420
Nucleotide excision repair
smut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMUGS5_06950 (ligA)
03410 Base excision repair
SMUGS5_06950 (ligA)
03420 Nucleotide excision repair
SMUGS5_06950 (ligA)
03430 Mismatch repair
SMUGS5_06950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smut03032
]
SMUGS5_06950 (ligA)
03400 DNA repair and recombination proteins [BR:
smut03400
]
SMUGS5_06950 (ligA)
Enzymes [BR:
smut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SMUGS5_06950 (ligA)
DNA replication proteins [BR:
smut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SMUGS5_06950 (ligA)
DNA repair and recombination proteins [BR:
smut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SMUGS5_06950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMUGS5_06950 (ligA)
MMR (mismatch excision repair)
DNA ligase
SMUGS5_06950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMUGS5_06950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AFM81885
LinkDB
All DBs
Position
complement(1473765..1475723)
Genome browser
AA seq
652 aa
AA seq
DB search
MKERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILPNSPTHRVG
DLVLDGFEKYRHEYPLFSLQDAFSREELDAFDRRIKAEFPQADYLAELKIDGLSISLTYV
NGRLRVGATRGDGTVGENITENLKRVRDIPLHLPENIDLTVRGECYLPKASFKTINAERR
ENGETEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTAASSQEAVLESFAKLGFT
VNPRHIISSSMDAIWQFIEDVAKERAELAYDIDGVVIKVNSLALQEALGFTVKAPRWAIA
YKFPAEEKTAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DIVVVYKAGDIIPAVLHVVENKRDQQVPLPIPTVCPSCQSELIHFEDEVALRCVNPRCPA
QLKEKLIHFASRDAMNIIGLGPAIVEKLFTAELICDVADIYQLTPENLMQLEGIKEKSAT
KLYKAIQASKANSAEKLLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDGLGI
VIAESLKTYFATAGAQKLLIELKTAGLNLTYLGKKTASDAALTGMTIVLTGKLANLTRSQ
AKEKLQSLGANVAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgtatgaatgagctggttcagcttcttaatcaatatgccagagaatattat
acaaaagataatcccagtgtttcagatgctgagtacgataaactctatcgtgaacttgta
gaacttgaaaaagaatttccagaggatattcttcctaatagtccgacgcatcgtgtgggt
gaccttgttttagatggttttgaaaagtatagacatgagtatcctttattttctttacaa
gatgctttttctcgtgaagaattagatgcttttgataggcgtattaaagcagaatttccg
caggctgactatttagcagaattgaaaattgatggtctttctatttctctaacctatgtc
aatggccgtttacgagttggggctaccagaggagacgggacagttggtgaaaatatcacg
gagaaccttaagcgtgtgcgagatattccactgcatttacctgaaaatattgatttgaca
gtacgtggggaatgctatttgcctaaagcttcctttaaaactatcaatgctgagcgtagg
gaaaatggtgagactgaatttgcgaatccgcgaaatgcagcggcaggcactttgcgtcaa
ttggatactaaggttgtggctaaacgaaaattggcgacctttatctatcaagaggctggt
ccgacagctgccagcagtcaggaagcagtactagaaagttttgccaagctcggttttaca
gtcaatcctcgtcatattatttcctcctcaatggatgctatttggcagtttattgaagat
gttgctaaggaaagggctgaacttgcctatgatattgatggcgttgttatcaaagtgaac
agtttggccttacaagaggcgctcggttttacagttaaagcacccagatgggccattgcc
tataaatttccagctgaagaaaaaacagcagaaattttatcggttgactggacagttggt
cgaacaggggttgtgacaccaacagctaatttaacacctgttcagctggcaggaacaacg
gtcagccgagcaaccttacacaatgttgactatattgctgaaaaggatatccgaattggt
gacatagttgttgtttataaggctggagatatcattccggcagttttacatgtcgttgaa
aacaaacgtgaccagcaagtgccgctaccaattccaacagtctgtccgtcctgtcagagt
gaactgatccattttgaggatgaggtggctcttcgctgtgttaatccacgctgtccagcc
caattaaaggagaaattgattcattttgctagtcgtgatgctatgaatattataggatta
ggtccagctattgttgaaaaattatttacagcagaactcatttgcgatgtggctgatatc
tatcagttgactcctgagaaccttatgcagctcgaagggattaaggaaaaatcagcaact
aagctttataaggctattcaggcttccaaagccaattcagccgaaaaacttttatttgga
ttgggtattcgtcatgtcggcagtaaggcgagcagacttcttatggaacgctttgagagt
cttgagcagttagctgctgctgattttgatgatattgctgctattgatggtttgggaatt
gttattgcagagtctttaaaaacttactttgcaacagcaggcgcacagaaacttttgata
gagttaaaaacagcaggtttgaacttgacttatcttggcaaaaaaacagcaagtgatgct
gctttaactgggatgacaattgttttaactggtaaactagcaaacttgacccgcagccaa
gctaaagaaaaactacaaagtcttggtgctaatgtagctggaagtgtttctaaaaaaacc
agtctggtcatagcggggagtgatgcaggttctaaattagaaaaggctaaaactttagga
attgaaattaaggatgaagcttggctagaaagtttgtga
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